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Elyra s1 super resolution microscope

Manufactured by Zeiss

The Zeiss ELYRA S1 is a super-resolution microscope that utilizes structured illumination microscopy (SIM) to achieve resolution beyond the diffraction limit of light. It provides enhanced spatial resolution compared to conventional optical microscopy techniques. The ELYRA S1 is designed to enable high-resolution imaging of cellular and subcellular structures.

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5 protocols using elyra s1 super resolution microscope

1

Confocal and Super-Resolution Imaging

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Cells were imaged with the 63× oil 1.4 numerical aperture objective of a LSM880 Zeiss Laser inverted microscope outfitted with confocal optics and four lines of excitation lasers (405, 488, 561, and 642 nm) under the control of Zen 2012 software (Zeiss). Cells were also imaged using Zeiss ELYRA S1 Super-Resolution Microscope with the 100 × 1.46 numerical aperture oil objective under the control of the Zen 2012 software (Zeiss). Colocalization was obtained using the colocalization module built into the Zen software.
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2

Quantifying Fluorescence Signals via Confocal and 3D-SIM Microscopy

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Confocal images were acquired under the confocal mode of the Zeiss ELYRA S1 super-resolution microscope (Zeiss) equipped with an Alpha Plan-Apo 63×/1.46 oil objective, 405 nm/488 nm/561 nm/640 nm laser illumination, and standard excitation and emission filter sets. To quantify fluorescence signal intensities, images were acquired under the same laser intensities, converted to the maximum intensity–projected images of multiple z-stacks, and then analyzed using the Zeiss Zen v2.1 software.
For 3D-SIM microscopy, images were acquired by the same ELYRA S1 microscope and then processed using the ZEN black software (Zeiss).
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3

Super-Resolution Confocal and 3D-SIM Imaging

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Confocal images were acquired under the confocal mode of the Zeiss ELYRA S1 super-resolution microscope (Zeiss) equipped with an Alpha Plan-Apo 63×/1.46 oil objective, 405 nm/488 nm/561 nm/640 nm laser illumination, and standard excitation and emission filter sets. To quantify fluorescence signal intensities, images were acquired under the same laser intensities, converted to the maximum intensity–projected images of multiple z-stacks, and then analyzed using the Zeiss Zen v2.1 software.
For 3D-SIM microscopy, images were acquired by the same ELYRA S1 microscope and then processed using the ZEN black software (Zeiss).
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4

Immunofluorescent Visualization of Zera-Induced Protein Bodies

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Immunofluorescent staining was conducted to evaluate the formation and localization of Zera®-induced protein bodies. Four-well chamber slides (AEC Amersham) were pre-coated with poly-L-Lysine (Sigma-Aldrich) and seeded with 30000 HeLa cells per well. Three days post transfection with pMExT gp140-Zera®, pMEx Zera®-gp140, pMExT gp140 or pMEx Zera®-eGFP, cells were fixed with 4% paraformaldehyde for 10 min, washed with 1x phosphate buffered saline (PBS), permeabilized and blocked with 2% BSA-PBS supplemented with 0.25% Triton X-100 for 1 h at room temperature. Cells were double-stained overnight at room temperature with goat anti-HIV-1 gp120 and rabbit polyclonal antibodies to calnexin (Abcam), diluted 1:500 and 1:200, respectively in 2% BSA-PBS. Following washes with PBS, cells were incubated in the dark for 1.5 h with the fluorophore-conjugated secondary antibodies (1:500 donkey anti-Goat-Cy3 and 1:500 donkey anti-rabbit-Alexa488/Cy3) diluted in 2% BSA-PBS. The cells were then washed with PBS and incubated for 10 min with 1:5000 Hoechst nuclei stain diluted in PBS. Following washes in PBS, slides were mounted with antifade-moviol mounting media. Slides were imaged with a confocal microscope (Carl Zeiss 880 LSM confocal with Fast Airyscan technology and the Elyra S1 super-resolution microscope).
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5

Mitochondrial Imaging via Confocal and Super-resolution Microscopy

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Images were acquired with a Nikon TI A1R inverted confocal microscope with a CFI60 Plan Apochromat Lambda 60x oil-immersion objective lens. The Zeiss ELYRA S.1 superresolution microscope with a Plan Apochromat 63x objective/1.4 NA oil objective was used for superresolution microscopy. Images were acquired with the following scan parameters: a “frame” scan mode of 1,024 × 1,024 pixels with a 16-bit depth and a grating of three rotations. For imaging the mitochondria, 561-nm excitation was used and emission was collected with a BP 570- to 620-nm filter. Fluorescence intensity was collected using an sCMOS pco.edge electron multiplying charge coupled device (EMCCD) camera with exposure time set to 100 ms.
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