The largest database of trusted experimental protocols

7 protocols using col1α1

1

Western Blot Analysis of Cell Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
After washing with ice-cold PBS, cells were lysed with RIPA buffer (Thermo) containing protease inhibitor cocktail (Thermo). Total protein was isolated by centrifugation of the lysate at 12,000 rpm for 10 min at 4°C after which the protein concentration was determined by the Bradford method. The total protein (40 ㎍) was separated in 8% or 10% SDS-polyacrylamide gels by electrophoresis and transferred to PVDF membranes (Millipore, MA, USA). The blots were subsequently blocked with 3% skim milk (BD, MD, USA) or BSA (Sigma-Aldrich) in TBST for 1 h and then incubated overnight at 4°C with antibodies against CTNNA2 (1:500, Santa Cruz Biotechnology), type I collagen α1 (COL1 α 1; 1:2500, Abcam), Myostatin (MSTN; 1:400, Santa Cruz Biotechnology), or β-actin (1:2000, Santa Cruz Biotechnology) diluted with 1% skim milk or BSA in TBS. After washing with TBST, the blots were incubated with horseradish peroxidase (HRP)-conjugated secondary antibody (goat anti rabbit or mouse, Santa Cruz Biotechnology) for 1 h at room temperature. After washing with TBST, antibody binding was detected with Super Signal West Pico Chemiluminescent Substrate (Thermo).
+ Open protocol
+ Expand
2

Protein Analysis via Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
For protein analysis, cells were washed with 1× PBS and lysed in a buffer containing 1% sodium dodecyl sulfate (SDS) and 60 mM Tris-Cl, pH 6.8, and tissues were lysed in PRO-PREPTM (iNtRON Biotechnology). The lysate was mixed briefly using a vortex, boiled for 10 min, and centrifuged at 13,000 g for 10 min at 4°C. Protein concentrations were assessed using the BCA assay kit (Pierce). Protein samples of equal amount were separated by SDS-PAGE and transferred to nitrocellulose membranes. Immunoblot analysis were performed using the following antibodies: polyclonal antibodies against GPx7 (Proteintech), Col1α1 (Abcam), TNFα (Cell Signaling), αSMA, TIMP1, MMP13, ADRP, and GAPDH (Santa Cruz Biotechnology).
+ Open protocol
+ Expand
3

Western Blot Analysis of Liver Fibrosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells and liver tissues were lysed in RIPA buffer (Millipore, Billerica, MA, USA), and total proteins were extracted. The protein concentration was measured using a BCA protein assay kit (Beyotime, Nanjing, China). Proteins used for Western blot analysis were performed routinely; membranes were incubated with primary antibodies against α-SMA (1 : 1000; Abcam), Col1α1 (1 : 2000; Abcam), GAPDH (1 : 2500; Abcam), and PAK2 (1 : 2000; Abcam) overnight at 4°C. Then, HRP-conjugated goat anti-rabbit IgG (1 : 1000; Cell Signaling Technology, Beverly, MA, USA) secondary antibody was employed at 37°C for 1 hour. The immunobands were visualized using the chemiluminescence HRP substrate (Millipore). The protein expression was standardized to GAPDH and quantified using Gel-Pro Analyzer software (Media Cybernetics, Rockville, MD, USA).
+ Open protocol
+ Expand
4

Protein Extraction and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein was extracted from fresh tissues and mRTECs by using RIPA lysate. The total protein concentration was measured using a BCA protein quantitative kit and denatured by heating. The protein samples were assessed by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), semi-dry transferred to polyvinylidene fluoride (PVDF), and incubated with primary antibody against α-SMA (1:350, Affinity, USA) and Col1α1 (1:500, Abcam, USA) at 4°C overnight. Next, after being washed by TBST three times and incubated with a specific secondary antibody (1:3,000; Boster, China) for 2 h at room temperature. Immunoreactivity was visualized using an ECL detection system.
+ Open protocol
+ Expand
5

Quantifying Protein Expression in Liver Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from LX-2 cells, mouse, and human liver tissues by lysing in RIPA buffer (Millipore, Billerica, MA, USA) supplemented with protease inhibitors (1% phenylmethanesulfonyl fluoride (PMSF)). The protein concentration was quantified by the BCA protein assay kit (Beyotime, Nanjing, China) using BSA as standard. Total protein was separated by loading on 6%-10% Trisglycine SDS-PAGE and then transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Darmstadt, Germany). Primary antibodies incubated on the membranes used in this study were as follows: α-SMA(1:500; Affinity, Changzhou, China), Col1α1 (1:1000; Abcam, Cambridge, MA, USA), Notch2 (1:1000; Cell Signaling Technology, Beverly, MA, USA), Notch3 (1:1000; Abcam), Hes1 (1:1000; Abcam), β-actin (1:1000; Abcam), GAPDH (1:2500; Abcam), and Vinculin (1:1000; Abcam). The expression levels of β-actin, GAPDH, or Vinculin were used as the control for total protein amount. Horseradish peroxidase (HRP)-conjugated goat anti-rabbit immunoglobulin G (IgG) (1:1000; Cell Signaling Technology) was used as a secondary antibody at room temperature for 1 h. Protein bands were detected using the chemiluminescence HRP substrate (Millipore). The densitometric analysis of immunoblots was measured by Gel-Pro Analyzer software (Media Cybernetics, Rockville, MD, USA).
+ Open protocol
+ Expand
6

Investigating NF-κB Signaling and Osteogenesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The RAW 264.7 cells were cultured with PBS, LPS, KR−1, and KR−2 media for 30 min, and MC3T3-E1 cells were grown in various CM osteogenic media for 14 days. Subsequently, the cells were lysed for 30 min in lysis buffer with protease inhibitors (MedChemExpress), and cell lysates were analyzed by gel electrophoresis after samples were collected for processing and transferred to nitrocellulose membranes. The membrane was incubated with the relevant antibody for 12 h at 4 °C before exposure, after blocking had been performed with a 5% bovine serum albumin solution (Solarbio) for 1 h. The following antibodies were used for Western blotting: p65, phospho-p65, IκBα, phospho-IκBα, GAPDH, β-tubulin, OCN, Runx-2, and COL1α1 (all 1:1000 dilutions, Abcam, Cambridge, UK).
+ Open protocol
+ Expand
7

Western Blot Analysis of MSC Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Twenty micrograms of protein from MSC homogenates was separated on 15% or 10% polyacrylamide denaturing gels and electroblotted onto polyvinylidene fluoride membranes. The primary antibodies used were α-SMA (1:1000, Abcam, USA), col1α1 (1:1000, Abcam, USA), Ras (1:1000, Cell Signaling Technology, USA), p-Erk1/2 (1:1000, Cell Signaling Technology, USA), Erk1/2 (1:1000, Cell Signaling Technology, USA), p-Smad2/3 (1:1000, Cell Signaling Technology, USA), and Smad2/3 (1:1000, Cell Signaling Technology, USA). The results were normalized to tubulin (1:1000 dilution, Abcam).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!