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5 protocols using fscn1

1

Western Blot Analysis of Protein Expression

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After transfection, the cells were washed with ice-cold PBS three times and lysed with radioimmunoprecipitation assay lysis buffer (Beyotime Institute of Biotechnology, Haimen, China) supplemented with protease inhibitors (Promega Corp.). Thirty micrograms of proteins was subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis and then transferred to the nitrocellulose membrane. The membrane was blocked with 5% nonfat milk and incubated with the primary antibody for 1.5 h. The protein band, specifically bound to the primary antibody, was detected using the FluorChem imaging system (Alpha-Innotec GmbH, Kasendorf, Germany). The primary antibodies were FSCN1, ERK, and p-ERK (both 1 : 1,000 dilution; both Santa Cruz Biotechnology, Inc., Dallas, TX, USA) and GAPDH (1 : 5000; #5174, Cell Signaling Technology).
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2

Comprehensive Protein Analysis Protocol

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Total cellular protein and western blot analysis were performed according to previous studies [43 (link), 44 (link)]. The antibodies used were as follows: Dicer (#5362; Cell Signaling), E-cadherin (#610181; BD), FSCN1 (sc-46675; Santa Cruz), GAPDH (sc-365062; Santa Cruz), LASP1 (MAB8991; Merck Millipore), Vimentin (#550513; BD) and XIAP (#14334; Cell Signaling).
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3

Immunohistochemical Analysis of Apoptosis Markers

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Formalin-fixed, paraffin-embedded tissue was cut into 4 μm section, de-paraffinized in xylene, rehydrated through graded ethanol, quenched for endogenous peroxidase activity in 3% hydrogen peroxide, and processed for antigen retrieval by heating in 10 mM citrate buffer (pH 6.0) at 90–100°C (XIAP, FSCN1, Ki-67, Bcl-2, Bax, Caspase-3). Sections were incubated at 4°C overnight with XIAP (1:200, Cell Signaling), FSCN1 (1:100, Santa Cruz), Ki-67 (1:400, Cell Signaling), Bcl-2 (1:500, Santa Cruz), Bax 1:500, Santa Cruz) and Caspase-3 (1:200, Santa Cruz). Immunostaining was performed using UltraSensitive S-P Detection Kit (KIT-9720, Maixin, Fuzhou, China), and then color was developed by using a DAB kit (DAB-0031, Maixin, Fuzhou, China). Subsequently, sections were counterstained with hematoxylin. TUNEL assay was performed with an in situ cell death detection kit (Roche) according to the manufacturer's instructions. Quantification of immunohistochemical stain intensity was performed as previously described [7 (link), 43 (link)].
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4

Protein expression analysis by Western blot

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Proteins were extracted using radioimmunoprecipitation assay (RIPA) lysis buffer with protease inhibitor and quantified by a BCA kit (Thermo, USA). Proteins in the lysate were separated by 10% SDS-PAGE and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, USA). The membrane was incubated with 5% skim milk powder for 2 h at room temperature to block nonspecific binding. The membrane was then treated with antibody against SOX2 (1:1,000; Cell Signaling Technology [CST]), β-catenin (1:1,000; CST), AKT (1:1,000; CST), HBEGF (1:1,000; Santa Cruz), FSCN1 (1:1,000; Santa Cruz), and β-actin (1:1,000; CST) at 4°C overnight. Target proteins were visualized using secondary antibodies (1:5,000 dilution) and enhanced chemiluminescence (ECL) western blot detection reagents (ECL New England Biolabs, USA).
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5

Immunohistochemical Profiling of Tumor Markers

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Tissues were formalin-fixed and paraffin-embedded (FFPE). IHC staining was performed according to the instructions provided by the Envision Immunohistochemistry Kit (Dako, Denmark). The tumor tissues were treated with monoclonal antibody against SOX2 (1:100; CST), polyclonal antibodies against HBEGF (1:200; Santa Cruz), and FSCN1 (1:200; Santa Cruz) at 4°C overnight. The IHC score was based on the proportion of immunostaining areas (0%, 0; 1%–25%, 1; 26%–50%, 2; 51%–75%, 3; and 76%–100%, 4) multiplied by the intensity of the staining (0, negative; 1, weak; 2, moderate; and 3, intense). The median score was selected as the cutoff value to define high and low expression.
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