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Improm 2 reverse transcriptase kit

Manufactured by Promega
Sourced in United States, Switzerland, United Kingdom

The ImProm-II Reverse Transcriptase kit is a laboratory product used for the synthesis of complementary DNA (cDNA) from RNA templates. The kit contains the ImProm-II Reverse Transcriptase enzyme, which is used to catalyze the conversion of RNA into single-stranded cDNA for various downstream applications.

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82 protocols using improm 2 reverse transcriptase kit

1

Gene Expression Analysis of Estrogen and Progesterone Receptors

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RNA was isolated from cell pellets using Qiagen RNeasy Mini kits with DNase treatment. cDNA was synthesised with Promega Im-Prom-II reverse transcriptase kit. Real-time PCR was conducted on the 7500HT-Fast Applied Biosystems machine using TaqMan PCR master mix (Biosciences, #4440047) and specific TaqMan probes (ESR1, Hs01046816_m1; ACTB, Hs01060665_g1) or Fast SYBR green PCR master mix with specific primers for PGR (PGR Fwd: AAATCATTGCCAGGTTTTCG, PGR Rev: TGCCACATGGTAAGGCATAA). The ΔΔCt method was used to calculate relative gene expression, normalised to β-actin.
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2

Reverse Transcription of Total RNA

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To create the cDNA, a 20 μL reverse transcriptase (RT) reaction was completed in a BioRad C1000 touch thermocycler using the Improm-II Reverse Transcriptase Kit (Catalog #A1250; Promega, Madison, WI, USA). The first step consisted of 1 μg of total RNA template, 10 μM of random hexamer primers, and 2 mM of oligo-dT primers. The RT protocol was to anneal primers to RNA at 94 °C for 5 min, copy the first strand for 60 min at 42 °C (optimum temperature for the enzyme), then heat inactivate at 70 °C for 15 min and hold at 4 °C until ready to analyze by Nanodrop (Waltham, MA, USA). The concentration of cDNA obtained was determined by measuring the absorbance at 260 nm and 280 nm using an extinction coefficient of 33 (for single stranded DNA). Genomic DNA contamination was assessed by a real-time RT-PCR assay for the reference genes samples.
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3

Hypoxic Regulation of Astrocytes and Pericytes

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Astrocytes and pericytes isolated from GLAST-CreERT2; HIF-1αfl/fl and SMMHC-CreERT2; HIF-1αfl/fl mice respectively, were treated with oil or tamoxifen (2 µM) during 48 h hypoxic exposure (1% O2) then harvested in TRIzol® reagent (Thermo Fisher Scientific, Switzerland). As shown previously [37 (link)], this time point ensures hypoxic target gene induction in these primary cells without the occurrence of cell death. Total RNA was isolated by PureLink® RNA Mini Kit (Invitrogen, USA) according to the manufacturer’s description. 1 μg of RNA was reverse transcribed (ImProm-II ReverseTranscriptase kit, Promega, Switzerland) and 20 ng cDNA used for Power Sybr® Green qPCR with an ABI 7500 Fast Real-Time PCR System (Applied Biosystems, Switzerland). QPCR primers were used at 100 nM final concentration: Glut1 forward 5’-GGGCATGATTGGTTCCTTCTC-3’ and reverse 5’-CAGGTTCATCATCAGCATGGA-3’; VEGF forward 5’-CGCAAGAAATCCCGGTTTAA-3’ and reverse 5’-CAAATGCTTTCTCCGCTCTAA-3’; β-actin forward 5’-CTGGCTCTAGCACCATGAAG-3’ and reverse 5’-GCCACCGATCCACACAGAGT-3’. All data were normalized to β-actin and fold changes were calculated based on the comparative ΔΔCt method.
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4

Quantitative RT-PCR of Gene Expression

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Reverse transcription was performed using the ImProm-II Reverse Transcriptase Kit (Promega, Madison, WI, USA) according to the manufacturer’s instructions. qRT–PCR analysis was performed using GoTaq qPCR Master Mix (A6001, Promega). mRNA levels were normalized to that of GAPDH. Changes in the transcript level were calculated using the 2−ΔΔCT method54 (link). Complementary deoxyribonucleic acid (cDNA) was amplified using primers indicated in Table S1 (see Supplementary information). cDNA was amplified using the Rotor-gene™ 6000 Real-Time PCR Machine (Qiagen GmbH, Hilden, Germany).
PCR fragments purified using the Nucleospin PCR and Gel Clean-up Kit (Macherey-Nagel GmbH & Co. KG, Düren, Germany) were sequenced by Eurofins Sequencing Service (Edersberg, Germany). Sequences were then analyzed with the BLASTn Web Tool on the NIH website (http://www.ncbi.nlm.nih.gov/BLAST/). All PCR-amplified fragments corresponded to the desired target.
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5

Quantitative Real-Time PCR Methodology for Gene Expression

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The quantitative real time PCR (qRT-PCR) technique was performed as described previously.35 (link), 36 (link) Briefly, total RNA was isolated from 300 mg of the liver from Con and experimental mice using TRIzol REAGENT (Sigma-Aldrich, Milan, Italy), according to the manufacturer's instructions. RNA (50 ng) was retrotranscribed using the ImProm-II Reverse Transcriptase Kit (Promega, Milan, Italy) to obtain cDNA, which was amplified using the StepOnePlus Real-Time PCR System (Life Technologies, Monza, Italy). Quantitative Real-Time PCR (qRT-PCR) was performed using GoTaq qPCR Master Mix (A6001; Promega). The mRNA levels were normalized to the levels obtained for hypoxanthine phosphoribosyltransferase 1, for β-glucuronidase, and for glyceraldehyde-3-phosphate dehydrogenase. The cDNA was amplified using the primers indicated in Supplementary Table S1 online and the Rotor-gene 6000 Real-Time PCR Machine (Qiagen GmbH, Hilden, Germany). Changes in the transcript level were calculated using the 2–ΔΔCT method.37 (link)
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6

Duodenal Gene Expression Analysis

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To obtain the cDNA, a total of 20 µL reverse transcriptase (RT) reaction was carried out in a BioRad C1000 touch thermocycler using the Improm-II Reverse Transcriptase Kit (Catalog #A1250; Promega, Madison, WI, USA). The concentration of the resulting cDNA was determined by measuring the absorbance at 260 nm and 280 nm, applying an extinction coefficient of 33 (for single-stranded DNA).
For gene expression analysis of the duodenum, a real-time polymerase chain reaction (RT-PCR) was conducted. The primers used in the real-time qPCR were designed based on gene sequences sourced from the Genbank database, utilizing the Real-Time Primer Design Tool software (https://www.idtdna.com/scitools/Applications/RealTimePCR/default.aspx) (IDT DNA, Coralvilla, IA, USA) [29 (link)]. The sequences and descriptions of the primers used can be found in Table 1. To assess primer specificity, a BLAST search against the genomic National Center for Biotechnology Information (NCBI) database was performed. The primer for Gallus gallus 18S rRNA was designed as a reference gene.
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7

DNA and RNA Extraction from Arabidopsis and Barley

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Genomic DNA was isolated from Arabidopsis and barley using the DNAmite plant genomic DNA extraction kit (Microzone, UK) according to manufacturer's instructions. Total RNA was extracted from Arabidopsis using a phenol‐SDS extraction and LiCl precipitation method based on Verwoerd, Dekker, and Hoekema (1989) or by using Trizol Reagent according to manufacturer's instructions (Invitrogen Life Technologies RNA, UK). RNA from hydroponically grown barley was also isolated using the Trizol method. First‐strand cDNA synthesis using 1 μg of total RNA was carried out using the ImProm‐II™ reverse transcriptase kit (Promega, USA) with an oligo(dT) primer according to manufacturer's instructions.
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8

Analyzing Staphylococcus aureus Virulence Genes

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Bacterial RNA was extracted from S. aureus grown in TSB until post-exponential phase, using TRIzol Reagent (Invitrogen Life Technologies), according to the manufacturer’s protocol. RNA was subjected to DNAse treatment using a RQ1 RNAse free DNAse (Promega). cDNA synthesis was performed with an ImProm-II Reverse Transcriptase kit (Promega). qRT-PCR for RNAIII, agrA and asp23 expression were performed using the primers and conditions described in a previous publication9 (link) and the SYBR Green PCR Master Mix (Applied Biosystems) equipment and kits. The 16S gene was used to normalize data. The (− ΔCt) value represents the difference in threshold cycle (Ct) between the target and control(16S) genes65 (link).
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9

Quantifying Endothelial CD31 Expression

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Expression of the endothelial gene CD31 was quantified by qRT–PCR. RNA was extracted from dissected retinas using a Nucleospin RNA kit (Macherey-Nagel) according to the manufacturer’s instructions, and cDNA was synthetized using an Im-Prom II Reverse Transcriptase kit (Promega). The expression of CD31 was analyzed using forward and reverse primers (F-TCCAACAGAGCCAGCAGTATGAG; R-TCCAATGACAACCACCGCAATG) combined with SYBR Green Master Mix (Thermo Fisher Scientific) in 384-well plates with a Bravo liquid handling system (Agilent). PCR amplification was conducted using a QuantStudio 12K Flex (Thermo Fisher Scientific). Each replicate cycle threshold (Ct) was normalized to the Ct of glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which was used as an endogenous control gene (primer forward: F-CATGGCCTTCCGTGTTCCTA; primer reverse: R-CCTGCTTCACCACCTTCTTGA). Changes in gene expression were compared with the mean of the control group by using the 2-ΔΔCt method (Livak et al., 2001 ) and expressed as fold change.
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10

Quantifying Gene Expression in C. elegans

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qRT–PCR was performed as described previously (Seo et al. 2013 (link)). Synchronized worms treated with sbp-1 RNAi or mdt-15 RNAi from eggs with or without 2% glucose treatment were harvested at young adult stage (day 1) with M9 buffer by washing three times. Synchronized worms were cultured on control RNAi with or without 2% glucose until L4 stage and then transferred onto pod-2 RNAi or fasn-1 RNAi plates. The pod-2 RNAi-treated or fasn-1 RNAi-treated worms were harvested after 24 h with M9 buffer by washing three times. RNA was isolated using RNAiso plus (Takara) and reverse-transcribed to cDNA using ImProm-II reverse transcriptase kit (Promega). Random primers (9-mers; Cosmogenetech) were used for reverse transcription except for the measurement of sbp-1 mRNA (Supplemental Fig. S6C), which was reverse-transcribed with oligo(dT) 15 primer (Promega). Quantitative real-time PCR was performed by using the StepOne real-time PCR system (Applied Biosystems), and relative quantity was analyzed by using comparative Ct methods described in the manufacturer's manual. The average of two technical repeats was used for each biological data set. mRNA levels of ama-1, which encodes an RNA polymerase II large subunit, were used for normalization. See the Supplemental Material for the sequence information of the primers used for the assays.
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