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55 protocols using rabbit anti vimentin

1

Immunofluorescence Staining of OVCAR-3 Cells

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The immunofluorescence staining was performed on cells grown on 22 × 22 mm coverslips. OVCAR-3 cells (3 × 104/well) were grown in a 12-well plate and cultured in the 37°C incubator overnight. At 72 h after the transfection with 80 nM siRNA-FOXA1, 4% w/v paraformaldehyde was used for fixation for 30 min. 0.5% v/v Triton X-100 was used in permeabilization for 5 min and 10% normal donkey serum for blocking for 1 h at room temperature. Then, the cells were incubated at 4°C overnight with the primary antibodies: mouse anti-E-cadherin (1 : 500, Abcam, USA) and rabbit anti-vimentin (1 : 500, Abcam, USA). After being washed by PBS for 3 times, secondary antibodies listed as follows were used for incubation for 1 h: Alexa Fluor® 488 donkey anti-mouse IgG or anti-rabbit (1 : 200, Jackson ImmunoResearch, USA). The cells were finally counterstained with DAPI (Beyotime, China) for 5 min, and the coverslips were mounted by using 10 μL of FluroGuard antifade solution (Bio-Rad, USA). Images were taken using a confocal microscope (Leica, Germany).
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2

Atrial Fibrosis Protein Analysis

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Briefly, total protein was isolated from ground frozen atrium tissues and CFs using RIPA lysis buffer (Beyotime, China). The samples were clarified by centrifugation at 13 800 g for 15 minutes at 4°C. Protein concentrations were determined using the BCA Protein Assay Kit (Beyotime, China). A total of 20 μg of protein was separated on 10% SDS‐PAGE at 80‐100 V for 2 hours and transferred onto PVDF membranes (Millipore, USA) at 300 mA for 1.5 hours. The membranes were blocked with 5% non‐fat milk in Tris‐buffered saline with tween 20 (TBST) for 1 hour at room temperature. Each membrane was incubated with primary antibodies at 4°C overnight and then secondary antibodies at room temperature for 1 hour the next day. The following antibodies were used: rabbit anti‐TGFβRII (1:500, Santa Cruz), rabbit anti‐α‐SMA (1:1000, Abcam), rabbit anti‐Col I (1:1000, Abcam), rabbit anti‐vimentin (1:1000, Abcam), mouse anti‐Col3α1 (1:250, Santa Cruz) and mouse anti‐GAPDH (1:2000, Abcam) antibodies. All proteins were visualized using the ECL reagent Kit (Millipore Corp, USA). The values of the band intensities were quantified using Image J software.
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3

Western Blot Analysis of EMT and p53 Markers

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Briefly, cells were washed with phosphate buffered saline (PBS) before harvesting with lysis buffer (Sangon Biotech, Co., Ltd., Shanghai, China). Protein was separated by SDS‐PAGE and transferred to a Polyvinylidene Fluoride (PVDF) membrane. Non‐specific binding was blocked with Tris Buffered Saline Tween (TBST) containing 5% (w/v) non‐fat dried milk. The membrane was then incubated with rabbit anti‐ATF3 (1:1000; Abcam, Cambridge, MA, USA), rabbit anti‐α‐catenin (1:50000; Abcam), rabbit anti‐E‐cadherin (1:10000; Abcam), rabbit anti‐Vimentin (1:2000; Abcam), rabbit anti‐Fibronectin (1:1000; Abcam), rabbit anti‐p53 (1:1000; Abcam), rabbit anti‐MDM2 (1:1000; Abcam), rabbit anti‐Bax (1:1500; Abcam), rabbit anti‐Slug (1:1000; Abcam), rabbit anti‐Snail1 (1:1000; Abcam), rabbit anti‐Twist (0.5 μg/mL, Abcam) and rabbit anti‐GAPDH (1:500; Abcam) at 4°C overnight. Next, membranes were incubated overnight with an Horseradish Peroxidase (HRP)‐conjugated goat anti‐rabbit IgG (1:10000; Abcam) for 1 hour at 37°C. The membranes were developed with an Emitter‐Coupled Logic (ECL) chemiluminescence detection kit and quantitated using ImageJ software. GAPDH served as a loading control.
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4

Western Blot Analysis of Stem Cell Markers

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Cells were lysed in RIPA lysis buffer (Solarbio, China) supplemented with 1% PMSF (Solarbio, China). Protein concentration was determined using Enhanced BCA Protein Assay Kit (Beyotime, China). Equal amount of protein sample was separated on 10 % SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Solarbio, China). The membranes were blocked in 5% BSA buffer (Solarbio, China) and then incubated with primary antibodies (Rabbit anti-Oct4, 1:1000, Abcam; Rabbit anti-Nanog, 1:1000, Abcam; Rabbit anti-N-cadherin, 1:5000, Abcam; Rabbit anti-E-cadherin, 1:10000, Abcam; Rabbit anti-vimentin, 1:1000, Abcam; Rabbit Anti-Snail, 1:1000, Cell Signaling; Rabbit Anti-GAPDH, 1:10000, Abcam) overnight at 4°C or for 2 h at room temperature. After three times of washes, the membranes were incubated with horseradish peroxidase-conjugated secondary goat anti-rabbit antibodies (1:4000; Biosharp, China) for 1 h at room temperature according to the manufacturer's instructions. The detection of immunocomplexes was performed with an enhanced chemiluminescence system (NEN Life Science Products, USA). The experiments were carried out on three separate occasions.
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5

Western Blot Analysis of EMT Markers

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Total protein was extracted from the cells using RIPA lysis buffer (CWBIO), and the protein concentration was determined using a BCA Kit (Pierce). The proteins were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (Millipore). The membranes were incubated overnight at 4°C with primary antibodies after blocking with 5% skim milk. The membranes were subsequently washed using Tris-buffered saline with 0.1% Tween and incubated with horseradish peroxidase-linked secondary antibody for 1 h. The blots were visualized using enhanced chemiluminescence reagent (Engreen). The following antibodies were used: Rabbit anti-E-cadherin (ab40772; abcam), Rabbit anti-β-actin (YT0099, Immunoway), Rabbit anti-vimentin (ab92547, abcam), Rabbit anti-N-cadherin (ab76011;abcam), Rabbit anti-Akt1 (ab32505), Rabbit anti-Akt1 (phosphoS473) (ab81283), Rabbit anti-SGK3 (#5642;CST), Rabbit anti-β-catenin(#8480, CST), Rabbit anti-non-phospho (Active) β-Catenin (Ser33/37/Thr41) (#8814, CST), Rabbit anti-AKT1 (S473)(ab81283), Mouse anti- p85α(#13666;CST).
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6

Cell Invasion Assay Protocol

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Cell invasion assays were carried out using 8-μm transwell filters that were precoated with Matrigel in 24-well plates (Corning BioCoat Matrigel Invasion Chamber kit, BD Biosciences, San Jose, CA, USA). Cells (HSC-2: 2.5 × 104, stromal cells: 7.5 × 104) were resuspended in 200 μL serum-free medium and added to the upper chamber, whereas the lower chamber was filled with Alpha-MEM including 10% FBS. After incubation for 24 h, the upper chambers were fixed with 4% paraformaldehyde, and the membranes were removed. The membranes were stained by Giemsa staining and double-fluorescent immunohistochemical staining with rabbit anti-vimentin (1:200, Abcam), and mouse anti-AE1/3 (Abcam). The membrane was removed and placed on a slide for microscopic observation. Migrated cells on the lower surface of the chamber were counted and photographed (BX51, Olympus, Tokyo, Japan). Cells were then counted under an inverted light microscope in three independent fields at ×100 magnification. Experiments were performed four times independently.
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7

Western Blot Analysis of Cellular Markers

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Cell or exosome lysates were prepared in 3-(N-morpholino)propanesulfonic acid (MOPS) buffer on ice for 30 min. Then, debris was removed by centrifugation for 20 min at 4°C. Protein concentration was measured with the bicinchoninic acid (BCA) assay (Sigma, St. Louis, MO, USA). After being electrophoresed in 10% Bis-Tris gel, proteins were transferred to the polyvinylidene fluoride (PVDF) membrane. The samples were then blocked in the nonspecific binding sites overnight. Following transfer to nitrocellulose membranes, samples were incubated with the primary antibodies as follows: rabbit anti-CK8 (1:200), rabbit anti-vimentin (1:200), rabbit anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (1:1,000), mouse monoclonal anti-CD63 (1:200), rabbit anti-Tsg101 (1:200), rabbit anti-calnexin (1:200), rabbit anti-Wnt11 (1:500), and rabbit anti-β catenin (1:500) (Abcam, Cambridge, MA, USA), Antibody labeling was identified using horseradish peroxidase (HRP)-conjugated secondary antibodies (Cell Signaling Technology, Boston, MA, USA). Images were analyzed by densitometry from Scion Image.
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8

Western Blot Analysis of EMT Markers

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Thirty microgram of proteins from each sample was separated on 8% sodium dodecyl sulphate‐polyacrylamide gel electrophoresis (SDS‐PAGE) and transferred electrophoretically to polyvinylidene difluoride (PVDF) membranes (Millipore). Membranes were blocked with 4% bovine serum albumin (BSA) and then incubated for 2 hours with rabbit anti‐PRRX1 (1:1000 dilutions; Abcam), rabbit anti‐PPARG2 antibody (1:500 dilutions; ProteinTech), rabbit anti‐E‐cadherin (1:500 dilutions; Abcam), rabbit anti‐vimentin (1:500 dilutions; Abcam), rabbit anti‐Snail1 (1:1000 dilutions; Abcam), mouse anti‐GAPDH (1:1000 dilutions; ProteinTech), rabbit anti‐Beta‐actin (1:500 dilutions; ProteinTech). The procedure was done following manufacturer's instructions.
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9

Histological Analysis of Cardiac Fibrosis and Remodeling

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The hearts were fixed in 10% formalin and embedded in paraffin. Cardiomyocyte diameters were evaluated by periodic acid-Schiff (PAS) staining. The degree of fibrosis was determined by picrosirius red staining, and the fibrotic area was calculated as the ratio of the total interstitial fibrosis area to the total LV area of an LV section using MetaMorph software (Molecular Devices, Sunnyvale, CA, USA). Volume fractions of collagen, α-SMA, and periostin were calculated in the same manner. Optimal cutting temperature compound (Funakoshi, Tokyo, Japan)-embedded frozen heart sections and CFs were subjected to immunohistochemistry and immunocytochemistry analyses using the following antibodies: rabbit anti-Col1 (1:100; Abcam, Cambridge, UK), rabbit anti-Col3 (1:100; Abcam), mouse anti-α-SMA (1:50; Dako, Glostrup, Denmark), rabbit anti-vimentin (1:100; Abcam), and rabbit anti-periostin (1:100; Abcam). Images were obtained using confocal laser microscopy (FV1000-D IX81; Olympus, Tokyo, Japan).
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10

Immunofluorescence Staining of DFCI168 Cells

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The DFCI168 cells were plated in 8‐well chamber slides at a concentration of 3 × 104 cells per well. Two days after plating, cells were fixed with 4% paraformaldehyde for 10 min, followed by permeabilization with 0.5% Triton X‐100 for 10 min. After blocking with 10% goat serum for 1 h, the cells were stained with Phalloidin Green 488 (1 : 500; BioLegend, San Diego, CA, USA). For vimentin staining, the following antibodies and dilutions were used: rabbit anti‐vimentin (1 : 1000; Abcam, Cambridge, MA, USA) and goat anti‐rabbit Alexa Fluor 594 (1 : 1000; Invitrogen, Thermo Fisher Scientific). Slides were mounted with antifade mounting media containing DAPI. Images were obtained using the Nikon Eclipse 80i microscope (Nikon, Melville, NY, USA).
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