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263 protocols using c jun

1

UV-induced Stress Signaling Pathway Analysis

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Protein extraction from cells treated with LJE and UVB irradiation was done by using CytoBuster™ Protein Extraction Reagent (EMD Millipore Corp, Burlington, MA, USA) that contained the Xpert Phosphatase (GenDEPOT, Barker, TX, USA) and Protease Inhibitor (GenDEPOT, Barker, TX, USA). The extracted proteins were separated with NuPAGE™ 4–12% Bis-Tris Protein gels (Thermo Fisher Scientific, Waltham, MA, USA) and transferred to the polyvinylidene fluoride (PVDF). The antibodies used for all the blots were as follows: p38 (phosphorylated) (dilution 1:1000), SAPK/JNK (phosphorylated) (dilution 1:1000), c-Jun (phosphorylated) (dilution 1:1000), ATF-2 (phosphorylated) (dilution 1:1000), p38 (dilution 1:1000), SAPK/JNK (dilution 1:1000), c-Jun (dilution 1:1000), ATF-2 (dilution 1:1000) (Cell Signaling Technology, Danvers, MA, USA), PKR (phosphorylated) (dilution 1:500) (R&D Systems, Minneapolis, MN, USA), PKR (dilution 1:1000) (Thermo Fisher Scientific, Waltham, MA, USA), beta-actin (dilution 1:15,000) (Santa Cruz Biotechnology, Inc., Dallas, TX, USA). The scanning densitometric values of each band were analyzed with Image J and represented the graph as ratio to loading control.
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2

Immunofluorescence and Western Blotting Protocols

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Immunofluorescence antibodies: c-Jun (Cell Signaling Technology, rabbit 1:800), Sox10 (R and D Systems, goat 1:100), CGRP (Peninsula, rabbit 1:1000), neurofilament (Abcam, rabbit 1:1000), donkey anti-goat IgG (H+L) Alexa Fluor 488 conjugate (Invitrogen, 1:1000), and Cy3 donkey anti-rabbit IgG (H+L) (Jackson Immunoresearch, 1:500).
Antibodies used for western blotting: c-Jun (Cell Signaling Technology, rabbit 1:1000), p75 NTR (Millipore, rabbit 1:1000), serine 63 phosphorylated c-Jun (Cell Signaling Technology, rabbit 1:1000), GAPDH (Sigma-Aldrich, rabbit 1:5000), calnexin (Enzo Life Sciences, rabbit 1:1000), and anti-rabbit IgG, HRP-linked (Cell Signaling Technology, 1:2000).
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3

Protein Extraction and Western Blotting

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Total protein was extracted from the liver of experimental fish with Total Protein Extraction Kit (Applygen Technologies Inc, Beijing, China), and nuclear and cytosolic fractions were collected using a nuclear protein extraction kit (Pierce, Nashville, TN, USA), according to the instructions of the manufacturers. Protein concentration was measured using BCA kit (Pierce). Fifty micrograms of protein was loaded onto 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride membranes (Pall Corporation, Port Washington, NY, USA). The membranes were incubated with 5% skimmed milk for 1 h at room temperature. Immunoblots were obtained using antibodies against the following proteins: ERK1/2, ERK1/2 (pThr202/Tyr204), JNK1/2, JNK1/2(pThr183/Thr185), p38, p38 (pThr180/Thr182), IKKα/β, IKKα/β (pSer176/Ser180), IκBα, IκBα (pSer32/Ser36), c-Jun, c-Jun (pSer73), NF-κB p65 and beta-actin (Cell Signaling Technology, Danvers, MA, USA). Western blots were exposed using SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Scientific, Waltham, MA, USA) and film images were scanned by Epson Perfection V33 (China).
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4

Immunolabeling and Western Blotting Protocols

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Immunofluorescence antibodies: c-Jun (Cell Signaling Technology, rabbit 1:800), Sox10 (R&D Systems, goat 1:100), CGRP (Peninsula, rabbit 1:1000), Neurofilament (Abcam, rabbit 1:1000) donkey anti-goat IgG (H+L) Alexa Fluor 488 conjugate (Invitrogen, 1:1000), Cy3 donkey anti-rabbit IgG (H+L) (Jackson Immunoresearch, 1:500).
Antibodies used for Western blotting: c-Jun (Cell Signaling Technology, rabbit 1:1000), p75 NTR (Millipore, rabbit 1:1000), serine 63 phosphorylated c-Jun (Cell Signaling Technology, rabbit 1:1000), GAPDH (Sigma-Aldrich, rabbit 1:5000), calnexin (Enzo Life Sciences, rabbit 1:1000), anti-rabbit IgG, HRP-linked (Cell Signaling Technology, 1:2000) .
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5

Quantifying Protein Expression After Transfection or Irradiation

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Cell lines at various times post-transfection or after γ-irradiation were collected and lysed in radioimmunoprecipitation assay buffer (Thermo Scientific) supplemented with protease and phosphatase inhibitors (Roche) as previously described36 (link). 20μg protein was resolved onto 4-20% mini-PROTEAN TGX gels (Bio-Rad), and transferred to PVDF membranes. Primary antibodies were used to detect pSer73-JUN (1:1000, Cell Signaling Technology, #3270), c-JUN (1:1000, Cell Signaling Technology, #9165), and β-actin (1:1000, Cell Signaling Technology, #4970). Following incubation with anti-rabbit IgG horseradish peroxidase-conjugated secondary antibodies (1:10,000, Santa Cruz, #2030), expression was detected via Clarity Western ECL (BioRad) and chemiluminescent film (Denville Scientific). Band intensities were quantified using NIH Image J software.
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6

Cytotoxicity Assay and Cell Signaling Analysis

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Roswell Park Memorial Institute (RPMI) 1640 Medium, Dulbecco's Modified Eagle's Medium (DMEM), penicillin/streptomycin, amphotericin B, and Trypsin-EDTA were purchased from Welgene (Seoul, Republic of Korea). Fetal bovine serum (FBS) was purchased from J R Scientific (Woodland, CA, USA). CuD was purchased from Extrasynthese (Genay, France). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), propidium iodide (PI), 7-aminoactinomycin D (7-AAD), 2′,7′-dichlorofluorescein diacetate (DCF-DA), and N-acetyl-L-cysteine (NAC), SP600125 and SB203580, were purchased from Sigma-Aldrich (St. Louis, MO, USA). Annexin V was purchased from BD Biosciences (Franklin Lakes, NJ, USA). Primary antibodies against phospho-cdc2, phospho-25c, p21, cleaved caspase-7 and -8, cleaved PARP, JNK, c-jun, phospho-c-jun, p38, phospho-p38, and GAPDH were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibodies against cyclin B1, cdc2, cdc25c, and phospho-JNK were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). The secondary antibody, horse antimouse immunoglobulin G (IgG)-horseradish peroxidase (HRP) and goat antirabbit IgG-HRP were purchased from Cell Signaling Technology.
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7

Skullcapflavone II Modulates Signaling Pathways

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Skullcapflavone II (5-hydroxy-2-[2-hydroxy-6-methoxyphenyl]-6,7,8-trimethoxychromen-4-one) was purchased from ChemFaces (Wuhan, Hubei, China). Antibodies against phospho-ERK, ERK2, p38, and NF-κB p65 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against phospho-NF-κB p65 (Ser536), phospho-JNK, JNK, phospho-p38, phospho-c-Jun, and c-Jun were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-phospho-tyrosine antibody (clone 4G10) was purchased from Millipore (Billerica, MA, USA). Anti-collagen type I cleavage-site antibody was purchased from ImmunoGlobe (Himmelstadt, Germany). Anti-GAPDH antibody was purchased from AbClone (Seoul, Korea). Horseradish peroxidase-conjugated goat anti-mouse IgG and rabbit IgG were obtained from KOMA Biotech (Seoul, Korea). Anti-MMP-1 and pro-collagen α1(I) N-propeptide (pN-ColIα1) antibodies were a gift from Dr. Chung, J. H. (Seoul National University College of Medicine, Republic of Korea) [53 (link)]. Alexa Fluor® 488 goat anti-rabbit IgG (H+L) and rhodamine-conjugated phalloidin were purchased from Thermo Fisher Scientific (Waltham, MA, USA).
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8

Characterization of c-JUN and SIRT1 Interactions

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AGS cells and stably lentivirus-infected AGS cells were harvested and lysed with NP40 lysis buffer (Beyotime). The proteins were precipitated with antibodies against c-JUN (Cell Signaling), SIRT1 (Abcam), or IgG (Cell Signaling). Next, protein G PLUS-Agarose beads (Santa Cruz Biotechnology, Santa Cruz, CA, USA) were added to the protein antibody mixture. The precipitated materials were collected, boiled, and analyzed by western blot as described above. The anti-acetylated-lysine antibody was purchased from Cell Signaling.
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9

Western Blot Analysis of Signaling Pathways

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Cells were lysed with Triton X-100 lysis buffer (Cell Signaling Technology) supplemented with protease inhibitor tablet (Roche). Proteins were resolved by SDS-PAGE and analyzed by western blotting. Primary antibodies: p-ERK1/2 (T202/Y204), p-MKK4 (S257/T261), MKK4, MKK7, p-JNK (T183/Y185), JNK, p-cJUN (S63), p-cJUN (T91), cJUN, p21, PARP, HA (Cell Signaling Technology), ATF3, p15 (Santa Cruz), MLK4 (Bethyl), tubulin, flag M2 (Sigma). All antibodies were used at the dilution of 1:1,000 except tubulin (1:10,000) and flag M2 (1:5,000).
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10

Lipopolysaccharide Signaling Pathways

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LPS (O111:B4) used was described previously (11 (link), 25 (link)). PP1 was from Calbiochem (San Diego, CA). Antibodies specific to HA-tag, myc-tag, Flag-tag [horseradish peroxidase [HRP] conjugated], CD11b (EPR1344), and the agaroses used in immunoprecipitations were from Abcam Inc. Abs specific for actin, Src, Siglec-G, p65, c-jun, HIF1α and GAPDH, phospho-specific Abs against Src (Tyr416), GSK-3β (Ser9), STAT3 (Tyr705), p65 (Ser536), P38 (Thr180/Tyr182), ERK (Thr202/Tyr204), IKKα/β (Ser176/180), IKBα (Ser32), and c-jun (Ser73) were from Cell Signaling Technology. HRP-conjugated second antibody (TrueBlot) was from eBioscience. Chemical inhibitor PP1 (5 μM) and zanamivir (50 μM) were from Selleck company.
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