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53 protocols using ab53444

1

Immunocytochemistry of Microglia and Markers

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BV2 cells and primary microglial cells were seeded into uncoated glass coverslips in 24-well culture plates. PFA-fixed cells were washed with PBS and incubated with permeabilization buffer (0.1 M PBS and 0.2% Triton X-100) for 15 min at RT. Then, cells were incubated with blocking buffer (0.1 M PBS, 0.2% Triton X-100, and 1% BSA) for 1 h at RT and treated with Iba1 (1:500, 019-19741; Wako), DSCR1 (1:100, RP3941; ECM Biosciences), and CD68 (1:200, ab53444; Abcam) primary antibodies in blocking buffer at 4°C overnight. The primary antibodies were washed with PBS, and then, the cells were immersed in Alexa Fluor 488–conjugated anti-rabbit IgG (1:500; Invitrogen) or Alexa Fluor 647–conjugated anti-rat IgG (1:500; Invitrogen) secondary antibodies for 2 h at RT. After washing the secondary antibodies with PBS, coverslips containing seeded cells were mounted on glass slides with mounting solution (Invitrogen).
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2

Immunohistochemical Analysis of Inflammatory Cells

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Detailed methods are described as previously.22 Briefly, 5 μm sections were prepared. Slices were deparaffinized and incubated with 5% bovine serum albumin for 30 minutes. Afterwards, samples were incubated with primary antibody at 4°C overnight. After washing with PBS, the sections were incubated for with secondary antibody for 2 hours. Fields of connective tissue adjacent to the junctional epithelium as well as alveolar bone were selected from each sample to calculate the number of positive cells. Primary antibodies used were as follows: Rat Anti‐CD68 antibody (1:100, Abcam, ab53444) and Rabbit Anti‐CD206 antibody (1:200, Abcam, ab64693). Secondary antibodies used were as follows: Goat Anti‐Rat IgG H&L (1:1000, Abcam, ab150157) and Goat Anti‐Rabbit IgG H&L (1:2000, Abcam, ab150079).
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3

Cardiac Morphological Analysis Protocol

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For cardiac morphological analyses, hearts were embedded in OCT Tissue‐Tek and frozen at −80°C. Cardiac cryosections were stained with H&E as described.15 Interstitial collagen was analysed in picro‐Sirius red F3BA‐stained LV cryosections.15 Cardiomyocyte cross‐sectional area (CSA) was determined in longitudinal 6‐μm LV cryosections stained with rhodamine‐labelled wheat germ agglutinin (dilution 1:150; WGA, RL‐1022, Vector Laboratories) and Hoechst 33258 (Sigma‐Aldrich) for nuclear staining.17 At least a minimum of 50 representative cardiomyocytes (three sections/heart) were measured per heart. Inflammation was stained in LV cryosections with antibodies recognizing the monocyte–macrophage marker CD68 (dilution 1:1000; abcam ab53444) counterstained with WGA and Hoechst 33258 as described.18 Images were acquired by fluorescence and bright‐field microscopy using Axio Observer 7 and Zen 2.6 pro software (Carl Zeiss Jena).
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4

Immunohistochemical Analysis of Microglia Activation

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At the end of the protocol, mice were deeply anaesthetized and were transcardially perfused with a 0.2M phosphate buffer (PB)/4% paraformaldehyde (PFA, Sigma-Aldrich). Brains were removed and placed in 30% sucrose for 48h and 30μm thick freezing microtome sections were realized. Slices were blocked with PBS, 0.5% Triton, 3% bovine serum albumin (BSA, Sigma-Aldrich) for 2h and then incubated overnight with anti-CD68 (1/800, Abcam, ab53444) and anti-CD206 (1/1000, Abcam, ab64693) antibodies in PBS, 0.5% Triton, 1% BSA at 4°C. Sections were then incubated with an Alexa-555-conjugated anti-rat (1/200, Invitrogen, A18744) or an Alexa-488-conjugated anti-rabbit (1/200, Invitrogen, 10424752) as secondary antibodies in PBS, 0.5% Triton, 1% BSA containing Hoechst 33342 (10μg/ml, Sigma-Aldrich).
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5

Immunohistochemical Analysis of Cuprizone-Induced Demyelination

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Paraffin-embedded sections of tissue from cuprizone-fed mice underwent
deparaffinization using Histoclear (2 x 10 min) and a gradient of ethanol (EtOH)
concentrations, each for 5 minutes in the following order: 2 x 100%, 1 x 95%, 1
x 70% and 1 x 50%, before being washed in Tris-buffered saline (TBS) for 3 x 5
minute washes. Slides were then placed in Vector Unmasking Solution under high
heat and pressure for 20 minutes before a final TBS wash. Slides were
permeabilized and blocked for 1 hour (5% horse serum and 0.3% Triton-X-100 in
PBS) before incubation with primary antibodies overnight at 4°C in a
humid chamber. Microglia/macrophages were detected with rat anti-CD68 (Abcam,
Ab53444, 1: 100) and cell death was assessed using rabbit anti-RIPK3 (Novus
Biologicals, NBP1-77299, 1:100) and rat anti-MLKL (Merck-Millipore, MABC604,
1:100). Following washes in PBS, fluorescently conjugated secondary antibodies
were applied (Invitrogen, 1:1000). Slides were counterstained with Hoechst and
coverslipped with Fluoromount-G (Southern Biotech). Images were acquired with an
Olympus spinning disk confocal microscope using a 60X objective with Slidebook 6
software. 3 animals were analyzed per time point.
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6

Hindlimb Muscle Degeneration Analysis

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Fourteen days post-injection, mice were euthanized, and hindlimb tissue samples were collected. The tissues were fixed in 4% PFA, embedded in paraffin, and sectioned at 10 μm. H&E staining was performed, and the images were taken by an inverted light microscope (Olympus) to evaluate muscle degeneration, muscle fiber diameter, and central nuclei density. Immunohistochemistry staining (IHC) was performed to characterize blood vessels using isolectin GS-IB4 (Invitrogen, I21414) and mouse anti-alpha-smooth muscle actin (α-SMA) (Abcam, ab7817), arteriole density using anti-ephrinB2 (Santa Cruz, sc-398735), proliferating cells using rat anti-Ki67 (Invitrogen, 14-5698-82), and inflammatory cells using rat anti-CD68 antibody (Abcam, ab534 4 4). After incubating with primary antibodies overnight, the corresponding secondary antibodies were applied for 1 hour. Cell nuclei were stained with DAPI. The tissue slices were then imaged by a confocal microscope. The quantifications were performed using ImageJ (n≥6 for each group).
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7

Immunohistochemical Analysis of Brain Tissue

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The brains were removed after perfusion with the fixative 4% paraformaldehyde and then immersed in 30% sucrose in PBS. Serial sections were cut on a freezing microtome, blocked, and incubated with the following primary antibodies: goat anti‐CD31 (diluted 1:250, R&D, AF3628), rabbit anti‐Iba1 (diluted 1:500, Wako, 019‐19741), rat anti‐CD68 (diluted 1:100, Abcam, ab53444), rat anti‐C3 (diluted 1:100, Abcam, ab11862), mouse anti‐AQP4 (diluted 1:100, Abcam, ab9512), rabbit anti‐GFAP (diluted 1:500, Abcam, ab7260), and rabbit anti‐MMP9 (diluted 1:500, Abcam, ab38898). After washing, the sections were incubated with the appropriate Alexa Fluor 488‐ or Alexa Fluor 555‐conjugated secondary antibody (diluted 1:1000, Invitrogen) and counterstained with DAPI. Images were captured with a Zeiss microscope (Zeiss, LSM780).
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8

Histological and Immunohistochemical Analysis of Cardiac Tissue

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Zeiss LSM980 confocal microscope (ZEISS) and Stereo Discovery.V8 were used to acquire fluorescence signals and tissue morphology. The images were processed by ZEN software (blue edition). Histology and immunohistochemical (IHC) analyses were performed with formaldehyde-fixed hearts that were routinely processed to generate frozen sections. Briefly, hearts were fixed in 4% paraformaldehyde overnight at 4 °C and transferred to ×PBS, followed by optimal cutting temperature compound (OTC) embedding. Haematoxylin and Eosin staining was performed for morphological analysis. WGA staining was used for cross-sectional area (CSA) measurements for at least 30 cells per section and three independent heart sections per group. Masson’s trichrome staining was used to measure fibrosis. IHC analyses of Anti-cardiac troponin T mouse mAb (1:200, Abcam, catalog no. ab8295, clone no. 1C11), Anti-alpha smooth muscle Actin rabbit mAb (1:200, Abcam, catalog no. ab124964, clone no. EPR5368), Anti-CD31 rabbit mAb (1:200, Abcam, catalog no. ab222783, clone no. EPR17260-263), Anti-CD68 rat mAb (1:200, Abcam, catalog no. ab53444, clone no. FA-11) and Anti-Vimentin rabbit mAb (1:200, Abcam, catalog no. ab92547, clone no. EPR3776) were performed to detect the cardiomyocyte CSA and cell co-localization, and DAPI was used to stain nuclei.
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9

Quantifying Myocardial Necrosis and Macrophage Response

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After all MRI studies, mice were sacrificed and hearts were extracted. Heart samples were thoroughly washed in saline solution and embedded in optimal cutting temperature (OCT) compound (Sakura Finetek, Torrance, CA, USA) and cut into 5 μm thick short-axis slices. To evaluate the necrotic myocardium, immunohistochemistry was performed on frozen tissue sections using a primary antibody against myoglobin (ab77232, Abcam, Cambridge, MA, USA) [24 (link), 25 (link)]. To detect necrotic myocardium, a HistoMouse™-MAX kit (Invitrogen, Waltham, MA, USA) was used to immunostain the sections, and color was developed using the Fast DAB with metal enhancer tablet set (Sigma-Aldrich). To analyze macrophage distribution, heart sections were stained with a primary antibody against CD68 (ab53444, Abcam) and Alexa Fluor 488-conjugated secondary antibodies (Molecular Probes, Eugene, OR, USA). The sections were counterstained with DAPI to visualize the nuclei. We evaluated colocalization of MNPs and macrophages in inflamed myocardium by color-coding the confocal laser scanning microscopic images using red for RITC (MNP), green for Alexa Fluor488 (macrophages), and blue for DAPI (nuclei). Stained tissue sections were digitally scanned using a slide scanner (SCN400, Leica, Oberkochen, Germany).
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10

Immunohistochemical Analysis of Tissue Markers

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Immunohistochemical analysis was performed as described previously (Pakharukova et al., 2019b (link); Kovner et al., 2019 (link)). Antibodies and dilutions used in this study were as follows: anti–alpha-smooth muscle actin (α-SMA; 1:200; cat. # ab7817, Abcam), anti-MMP9 (1:200; cat. # ab228402, Abcam), anti-collagen 1 alpha (1:200; cat. # ab34710; # ab53444, Abcam), anti-E-cadherin (1:200; cat. # ab76055, Abcam), and anti–N-cadherin (1:200; # ab76011, Abcam) antibodies with the respective secondary antibodies: a cyanine 3–conjugated goat anti-mouse IgG (H + L) cross-adsorbed antibody (1:500; cat. # M30010, Invitrogen, USA) or a GFP-conjugated AffiniPure goat anti-rabbit IgG (H + L) antibody (1:1000; cat. # 111–095-003, Jackson AB, USA) and a mouse anti-rabbit IgG-CFL 555 antibody (sc-516,249, Santa Cruz, USA). The slices were coverslipped with the Fluoro-shield mounting medium containing 4′,6-diamidino-2-phenylindole (DAPI; cat. # F6057, Sigma-Aldrich, USA) and examined under an Axioplan 2 microscope (Zeiss, Germany).
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