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Crystal screen ht

Manufactured by Hampton Research
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Crystal Screen HT is a laboratory product designed for high-throughput protein crystallization screening. It provides a standardized set of crystallization conditions to facilitate the identification of optimal conditions for protein crystal growth.

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38 protocols using crystal screen ht

1

Chymotrypsinogen Crystallization Optimization

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We determined crystallization conditions for chymotrypsinogen (Sigma) using the commercial Crystal Screen HT (Hampton Research) set up with a Mosquito robot (STP Labtech). Crystals were grown via hanging-drop vapor diffusion at 18°C from condition F11. To optimize the crystallization conditions further, we set up a 24-well tray using hanging-drop vapor diffusion with a fixed pH of 6.5, varying the concentration of both dioxane (10% or 15%) and ammonium sulfate (1.0–2.0 M). Each drop, consisting of 1 µl reservoir solution (1.0–2.0 M ammonium sulfate, 0.1 M MES pH 6.5 and 10% or 15% dioxane) and 1 µl 10.0 mg ml−1 enzyme, was equilibrated over 0.5 ml reservoir solution. The other two crystallization conditions consisted of either 0.2 M ammonium acetate, 0.1 M sodium acetate trihydrate pH 4.6, 30%(w/v) PEG 4000 or 0.5 M ammonium sulfate, 0.1 M sodium citrate tribasic dihydrate pH 5.6, with 1.0 M lithium sulfate monohydrate in the reservoir. All crystals were cryocooled in 3.5 M lithium sulfate. A typical drop containing these crystals is shown in Fig. 1.
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2

Xyloglucan Oligosaccharide Crystal Soaking

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Xyloglucan oligosaccharide,
XFG heptasaccharide with purity >80%, was purchased from Elicityl
(Crolles, France). XFG (see Abbreviations for nomenclature details)
was chosen for subsequent crystal soaking experiments for the following
reasons: First, it represents the complex sugar components of natural
xyloglucan to help reveal different sugar binding sites in the XFG
bound enzyme structure. Second, its relatively low degree of polymerization
(DP7) may allow successful diffusion into the enzyme active site in
the crystalline state to form a complex. d-xylose was purchased
from Sigma (U.S.A.). Polyethylene glycol 20000 as a 30% (w/v) stock
solution as well as crystallization screens Index HT, PEGRx HT, Crystal
Screen HT, and SaltRx HT were obtained from Hampton Research (Aliso
Viejo, CA, U.S.A.). Morpheus and MIDAS screens were from Molecular
Dimensions (Altamonte Springs, FL, U.S.A.). All other chemicals and
reagents used for crystal growth were purchased from Sigma (U.S.A.)
or Fisher Scientific (U.S.A.) and were used without further purification.
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3

Crystallization of 426c core-VRC01 Antibody

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Crystallization conditions for the 426c core-VRC01GL were screened using a Mosquito (ttplabtech)-dispensing robot. Screening was done with Rigaku Wizard Precipitant Synergy block no. 2, Molecular Dimensions Proplex screen HT-96, and Hampton Research Crystal Screen HT using the vapor diffusion method. Initial crystals were further optimized with Hampton Research Additive Screen to grow large and well-diffracting crystals. Final crystals were grown in a solution of 0.09M MgCl2, 0.09M Na-Citrate pH 5.0, 13.5% PEG 4000, 0.1M LiCl2. Crystals were cryoprotected in solutions containing 30% molar excess of their original reagents and 20% glycerol. Crystals diffracted to 2.3 Å. Data was collected at ALS 5.0.2 and processed using HKL2000 (Otwinowski and Minor, 1997 (link)).
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4

Screening and Optimization of MmATD Crystals

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The purified un-tagged MmATD was screened for crystallization conditions using different screens (Index, Crystal Screen HT, PEG/Ion and PEGRx from Hampton Research, USA) at two different temperatures—4 °C and 20 °C. Mosquito Crystal (TTP LabTech, UK) crystallization robot was used to set up crystallization experiments using sitting-drop vapor diffusion method by mixing 1 µl protein and 1 µl reservoir buffer in a 96-well MRC plate with three sub-wells (Molecular Dimensions, UK). The initial hits from the screens were further expanded for optimization using sitting-drop vapor diffusion method in 96-well format MRC plates having three sub-wells. Reservoir buffer with 0.1 M Bicine (pH 8.0) and 15% PEG1500 yielded good diffraction-quality crystals.
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5

Tf1AA10A Protein Crystallization Protocol

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TfAA10A crystals were initially obtained using sitting drop vapor diffusion and a 96-well plate with Crystal Screen HT from Hampton Research (Aliso Viejo, CA). Reservoirs contained 50 µL of well solution and drops had 0.2 µL of well solution and 0.2 µL of protein solution. A Phoenix crystallization robot (Art Robbins Instruments, Sunnyvale, CA) was used for setting up the screens. The best crystals were grown at 20 °C with 0.1 M Sodium acetate trihydrate pH 4.6, 20% v/v 2-Propanol and 0.2 M Calcium chloride dihydrate as the well solution. The protein solution that was used for crystallization contained 8.5 mg/mL of protein in 20 mM HEPES pH 7.5, 100 mM NaCl, 5% glycerol and 5% ethylene glycol.
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6

Crystallization of Racemic Peptides AucA and LnqQ

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L-AucA and D-AucA were dissolved in water to a final concentration of 80 mg/mL. The peptide solutions were mixed 1:1 to yield an 80 mg/mL racemate of D- and L-AucA which was diluted two-fold with water to yield 40 mg/mL DL-AucA. Both 80 mg/mL and 40 mg/mL racemate concentrations were subject to sparse-matrix crystallization screening using Crystal Screen HT (HR2-130) and SaltRx HT (HR2-136) from Hampton research. 50 μL of each precipitant condition solution was added into the wells of a SWISSCI 96-well plate. The two racemate concentrations were each mixed 1:1 with the precipitant in a 0.4 μL sitting drop, yielding 384 crystallization drops across two screens. The best conditions which produced single, three-dimensional crystals were selected for optimization to produce crystals suitable for X-ray diffraction. LnqQ was crystallized in the same manner, using 27 mg/mL and 13.5 mg/mL of racemate, respectively. Details of crystallization conditions, X-ray diffraction data collection, and structure solution and refinement can be found in the Supplementary Methods. Data refinement statistics are given in the Supplementary Information Table S5 and the refined models of racemic AucA and LnqQ have been deposited in the Protein Data Bank with the PDB codes 8AVR, 8AVS, 8AVU, 8AVT and 7P5R (Supplementary Data 15).
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7

Optimizing Protein-Ligand Crystal Structures

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Crystallization conditions were screened and monitored with an NT8 drop setter and Rock Imager (Formulatrix). Screening was done with Rigaku Wizard Precipitant Synergy block no. 2 (MD15-PS-B), Molecular Dimensions Proplex screen HT-96 (MD1–38), and Hampton Research Crystal Screen HT (HR2–130) using the sitting drop vapor diffusion method. P-p1f1fab + eOD-GT8 crystals were further optimized with hanging drop trays using vapor diffusion method. Final crystals for P-p1f1fab + eODGT8 were grown in 22.5% PEG 3350, 13.5% Isopropanol, 0.18M Ammonium Citrate pH 4.0. Final crystals for P-p3b3fab + 426c Core were grown in 0.67% PEG 4000, 0.67M Ammonium Citrate pH 5.5. P-p1f1fab + eODGT8 crystal were cryo protected in a solution of 20% molar excess of the crystallization condition and 20% Ethylene Glycol. P-p3b3fab + 426c Core were cryoprotected in the original crystallization condition. P-p3b3fab + 426c Core and P-p1f1fab + eODGT8 were sent to ALS 5.0.2 and diffraction data was collected to 3.59 Å and 3.2 Å respectively. Data were processed using HKL2000 (Otwinowski and Minor, 1997 ).
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8

Genetic Analysis of Streptomyces sp. RM-5-8

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The genetic DNA of Streptomyces sp. RM-5–8 was previously isolated and sequenced.20 (link) All primers were purchased from Integrated DNA Technologies, and E. coli 5α and BL21(DE3) competent cells were purchased from New England Biolabs. All DNA sequencing was conducted with the primers T7 promoter and T7 terminator (Table S3). Crystallization screens Index HT, PEGRx HT, Crystal Screen HT, and SaltRx HT were obtained from Hampton Research. Rigaku Wizard Classic screens were purchased from Molecular Dimensions. N-(2-hydroxyethyl)-piperazine-N′-ethanesulfonic acid (HEPES) buffer was purchased from Gold Biotechnology in a sodium salt form. All other reagents and chemicals were purchased from Sigma-Aldrich or Fisher Scientific and were used without further purification unless otherwise stated. PD-10 columns and Ni-NTA superflow columns were purchased from GE Healthcare. All solvents used were of ACS grade and purchased from Fisher Scientific or Pharmco-AAPER.
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9

Protein Complex Crystallization Conditions

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Complexes of iv1 scFv/iGL-VRC01 Fab, iv4-HL Fab/iGL-VRC01 Fab, iv9 Fab/iGL-VRC01 Fab and iv12 Fab/iGL-12A21Fab were concentrated to ~4.5, ~9, ~10, and ~10 mg/mL, respectively (Table S3). Complexes were screened using commercially available screens: Rigaku Wizard Precipitant Synergy block #2, Molecular Dimensions Proplex HT-96, Clear Strategy screens #1, and Hampton Research Crystal Screen HT; using vapor diffusion method. An NT8 dispensing robot, and Rock Imager was used to set up and screen crystallization conditions. Crystallization conditions were as follows: 0.1 M HEPES pH 7.0, PEG 8000 for iv1 scFv/iGL-VRC01 Fab; 0.1 M Tris pH 7.5, 8, %w/v PEG 20K, 8%w/v PEG MME 550, 0.2 M KSCN for iv4-HL Fab/iGL-VRC01 Fab; 0.08% Sodium Acetate pH 3.5, 24% PEG 4000, 0.16M Ammonium Acetate for iv9 Fab/iGL-VRC01 Fab and 0.1M KCL, 0.1 M Tris pH8, and 15%w/v PEG MME 2 K for iv12 Fab/iGL-12A21 Fab.
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10

Isolation and Characterization of Streptomyces sp. RM-5-8

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Streptomyces sp. RM-5-8 was isolated from the Ruth Mullins underground coal mine fire site and was provided by the University of Kentucky CPRI Natural Products Repository. All primers were purchased from Integrated DNA Technology, E. coli 5α and BL21(DE3) competent cells were purchased from New England Biolabs. Dimethylallyl S-thiolodiphosphate (DMSPP) was purchased from Echelon Biosciences. Polyethylene glycol 3350 (PEG 3350) and PEG 4000 both in the form of a 50% w/v solution, as well as crystallization screens Index HT, PEGRx HT, Crystal Screen HT and SaltRx HT were obtained from Hampton Research. Crystallization screens JCSG-plus HT-96, Morpheus and MIDAS were from Molecular Dimensions. All other reagents and chemicals were purchased from Sigma-Aldrich or Fisher Scientific and were used without further purification unless otherwise stated. PD-10 columns and Ni-NTA superflow columns were purchased from GE Healthcare. All non-native synthetic prenyl donors were synthesized as previously reported26 (link),27 (link). All solvents used were of ACS grade and purchased from Pharmco-AAPER. All DNA sequencing was conducted with the primers T7 promoter (5′-TAATACGACTCACTATAGGG-3′) and T7 terminator (5′-GCTAGTTATTGCTCAGCGG-3′). Daptomycin (DAP, Cubicin®) was generously provided by Merck.
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