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16 protocols using fc500

1

Visualizing Intracellular Gene Complex Trafficking

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VK2/E6E7 and DC2.4 cells were placed into a VWR 35-mm confocal dish (2 × 105 cells each). After overnight culture to allow cells to attach to the dish, the medium was replaced with 10% CVM containing Cy5-labeled gene complexes (300 ng DNA per dish) for 1, 3, and 6 h. The nucleus was stained with Hoechst 3334 15 min before the observations. Subsequently, the cells were washed twice with cold PBS to remove complexes that were not taken. The intracellular localization of gene complexes was observed using CLSM (Cy5 excitation, 633 nm; emission, 670 nm).
Cellular uptake was further verified quantitatively using a flow cytometer (FC500, BD Biosciences). The VK2/E6E7 and DC2.4 cells were added into a 12-well plate (1 × 105 cells per well). After the aforementioned treatment, the cells were collected at 1, 3, and 6 h. After thorough washing, the cells were resuspended in 0.5 mL PBS for analysis.
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2

Cell Cycle Analysis of FTY720-Treated Cells

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Cells were treated with FTY720 and then 106 cells were fixed in 80% ethanol at -20°C for 24 h. Fixed cells were stained according to the Cycle TESTTM PLUS DNA Reagent Kit protocol (BD Biosciences, San Jose, CA, USA) and analyzed by flow cytometry (Beckman Coulter FC 500). The experiment was repeated thrice under the same conditions.
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3

Cell Cycle Analysis of 3D Spheroids

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Cell cycle progression was analyzed using PI. To harvest the 3D spheroid colonies in the soft fibrin gels, the gels were washed three times with PBS and treated with Dispase® II for 20 min at 37°C.19 (link) The cells were centrifuged at 1500 rpm for 5 min and fixed in cold 70% ethanol for 24 h at 4°C. The following day, the fixed cells were centrifuged at 1500 rpm for 10 min, and the pellet was resuspended in 1 mL PBS, centrifuged, and resuspended in 1 mL PI staining solution and RNase A. After incubation at 37°C for 15−30 min in the dark, the cells were analyzed by FACS (FC500, BD Biosciences, CA) to determine the cell cycle stage.9 (link) A concentration of 10 μg/mL camptothecin was used as a positive control.
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4

Multiparametric Phenotyping of Immune Cells

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Freshly isolated SVF cells or cultured BMDM were washed in FACS buffer then incubated on ice with FcR-Blocker for 10m followed by appropriate fluorochrome-conjugated antibodies or isotype controls (BioLegend, anti-CD11b-AlexaFluor488 clone: M1/70, anti-F4/80-PE clone: BM8, anti-DLL4-APC clone: HMD4-1, anti-CD45-PECy7 clone: 30-F11, anti-CD11c-APC clone: N418) for 50m. Stained cells were washed 3X in FACS buffer then analyzed on a Beckman Coulter FC500 or BD FACSCelesta flow cytometer. Plots were analyzed with Beckman Coulter CXP Software or FlowJo v10.
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5

Cell Cycle Analysis of Cardiac Progenitors

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The cell cycle distribution involved in the proliferation process was detected by flow cytometry in human cardiac c‐Kit+ progenitor cells as described previously.11, 12, 13, 14 Briefly, cells were dissociated with 0.25% trypsin, washed three times with phosphate‐buffered saline (PBS) and fixed with cold 70% ethanol at 4°C over night. The ethanol was removed by centrifuge, and the cell pellets were washed with PBS for three times. Then, the propidium iodide/PBS staining buffer (propidium iodide 20 μg/mL, RNase A 10 μg/mL and 0.1% Triton‐X 100) was used to stain the cells at 37° for 30 minutes. Data were acquired with a Beckman Coulter FC500, and the percentages of G0/G1‐phase, S‐phase and G2/M‐phase cells were calculated with MODFIT LT software (BD Biosciences, San Jose, CA, USA).
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6

Flow Cytometry Standardization Protocol

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Flow cytometry analyses were performed on a Beckman Coulter FC500 (Marseille, France) or a BD LSRFortessa flow cytometer (BD Bioscience). Events in the range 50 000–100 000 were collected depending on the occurrence of the investigated leukocyte population. Data was analyzed using the FlowJo software (Tree Star Inc., Ashland, OR, USA). To ensure flow cytometric standardization, the voltage settings were updated daily using FlowSet calibration beads. All Abs were titrated before use. For staining, cells were incubated with Abs for 20 min, washed and resuspended in PBS prior to analysis.
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7

Eupatilin-Induced Apoptosis Analysis

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Cell apoptosis was detected with Annexin V-fluorescein isothiocyanate (FITC; Abcam, Cambridge, MA, USA) and propidium iodide (PI; Abcam) staining followed by flow cytometric analysis. Briefly, U87MG cells were seeded in 24-well culture plates at a density of 4×104 cells/well. Eupatilin at concentrations of 0, 12.5, 25 and 50 µM was added to the plates after 24 h. The cells were cultured for 48 h at 37°C and then harvested via centrifugation at 1,000 × g for 10 min. The cells were incubated with Annexin V-FITC and PI for 15 min at room temperature. Apoptosis was analyzed using flow cytometry (FC500; BD Biosciences).
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8

Measuring HR and NHEJ in cell lines

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HR was assessed in MCF-7 and K562 cells with chromosomally integrated or transiently transfected GFP reporters (HR-GFP) (30 (link)). Within each biological replicate, values were normalized to the averaged value of the control. NHEJ was measured using a PCR-based assay as described (22 (link)). Briefly, genomic PCR with primers flanking the I-SceI site within the chromosomally integrated HR-GFP reporter was performed to measure religation after I-SceI cleavage. Band intensities were normalized to PCR amplification of GAPDH. Cell cycle determination of propidium iodide-stained cells was performed on a Beckman Coulter FC500 or a BD Biosciences FACSCalibur flow cytometer as described (31 (link)).
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9

Cell Cycle and Apoptosis Analysis by Flow Cytometry

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Both cell cycle and apoptosis analysis were performed using a flow cytometer. For cell cycle assay, control and CENPF-knockdown cells were digested with 0.25% trypsin for 3 min at 37°C and washed with PBS buffer. For cell cycle analysis, cells were fixed with 70% ethanol for 30 min at room temperature and stained with propidium iodide (PI; cat. no. 421301; BioLegend, Inc.) in the presence of RNase A and incubated for 20 min at room temperature. For the detection of early and late apoptosis, living cells were double stained with Annexin V-FITC and PI (CA1020; Beijing Solarbio Science & Technology Co., Ltd.) for 15 min at room temperature. Subsequently, osteosarcoma cells were analyzed using a flow cytometer (FC500; BD Biosciences) and FlowJo software v.7.6 (FlowJo LLC).
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10

Multiparametric Phenotyping of Immune Cells

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Freshly isolated SVF cells or cultured BMDM were washed in FACS buffer then incubated on ice with FcR-Blocker for 10m followed by appropriate fluorochrome-conjugated antibodies or isotype controls (BioLegend, anti-CD11b-AlexaFluor488 clone: M1/70, anti-F4/80-PE clone: BM8, anti-DLL4-APC clone: HMD4-1, anti-CD45-PECy7 clone: 30-F11, anti-CD11c-APC clone: N418) for 50m. Stained cells were washed 3X in FACS buffer then analyzed on a Beckman Coulter FC500 or BD FACSCelesta flow cytometer. Plots were analyzed with Beckman Coulter CXP Software or FlowJo v10.
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