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18 protocols using rt reaction kit

1

Quantifying Gene Expression in Human Skin Fibroblasts

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Following treatment various processing factors for 24 h, total cellular RNA was extracted from HSFs using TRIzol (Invitrogen, USA) according to the manufacturer’s protocol. Thereafter, 1 mg of total RNA was reverse transcribed to cDNA using a RT reaction kit (Promega, USA). Real-time PCR was performed according to the manufacturer’s instructions using SYBR Premix Ex Taq (TaKaRa, Japan) as a DNA-specific fluorescent dye. Gene expression levels were calculated relative to the expression level of GAPDH. The primers used are listed in Table 2.
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2

Quantifying YB-1 Expression via RT-qPCR

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TRIzol reagent (Sigma-Aldrich; Merck Millipore) was used to extract total RNA from cells following treatment with LL-37. Total RNA was then reverse transcribed into cDNA using an RT reaction kit (Promega Corporation, Madison, WI, USA) according to the manufacturer's instructions. RT-qPCR analysis of YB-1 and β-actin mRNA expression levels was conducted using SYBR Premix Ex Taq II (Takara Biotechnology Co., Ltd, Dalian, China) and an Mx3000P qPCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.). Reaction mixtures contained 5 µl cDNA (diluted 1:5), 1 µl forward primer, 1 µl reverse primer, 10 µl qPCR Master Mix 10 and 3 µl nuclease-free water. Thermal cycling parameters consisted of 50 cycles of 95°C for 10 sec and 60°C for 30 sec. The primer sequences were as follows: Human YB-1 forward, 5′-CAGAATAGTGAGAGTGGGG-3′, and reverse, 5′-ATGTAGTAAGGTGGGAACC-3′; Human β-actin forward, 5′-TTCCATATCGTCCCAGTTGGT−3′, and reverse, 5′-CCAGGGCGTTATGGTAGGCA-3′. mRNA levels were calculated using the 2−ΔΔCq method (26 (link)).
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3

Apiosporamide Modulates Apoptotic Markers in MG63 Cells

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MG63 cells were treated with or without apiosporamide for 24 hrs. Total RNA was extracted using TRIzol reagent (Invitrogen, Waltham, MA, USA), and complementary DNA was synthesized using a RT reaction kit (Promega, Madison, WI, USA). qRT-PCR assays were performed as described previously.19 (link) Gene expression levels were calculated relative to the housekeeping β-actin and all the reactions were repeated at least three times. Primer sequences were synthesized as shown in Table 1.

The Primers Of Real-Time PCR

NameForward Primer (5ʹ-3ʹ)Reverse Primer (5ʹ-3ʹ)
BaxAGCTGAGCGAGTGTCTCAAGGTCCAATGTCCAGCCCATGA
Bcl-2GGTGAACTGGGGGAGGATTGGGCAGGCATGTTGACTTCAC
Caspase-3TGTGAGGCGGTTGTAGAAGTTGCTGCATCGACATCTGTACC
Caspase-9TTCCCAGGTTTTGTTTCCTGCCTTTCACCGAAACAGCATT
Caspase-8CATCCAGTCACTTTGCCAGAGCATCTGTTTCCCCATGTTT
β-actinGCCGCCAGCTCACCATTCGATGGGGTACTTCAGGGT
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4

Quantitative RNA Expression Analysis

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Total cellular RNA from DMSO and fangchinoline treated SGC7901 cells were extracted after 24 h using TRIzol (Invitrogen) according to the manufacturer’s protocol. One microgram of total RNA was reverse transcribed to cDNA in a total volume of 20 μl system using a RT reaction kit (Promega). Real-time PCR was performed using an Mx 3000P real-time PCR system (Applied Biosystems) according to the manufacturer’s instructions and SYBR Premix Ex Taq (Takara) as a DNA-specific fluorescent dye. PCR was carried out for 50 cycles of 95°C for 10 sec and 60°C for 30 sec. Primer sequences for detection of mRNA expression were synthesized (Table I). All the reactions were repeated at least three times. Gene expression levels were calculated relative to the housekeeping β-actin by using Stratagene Mx 3000P software.
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5

Real-time PCR Analysis of A375 Cells

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Total RNA of A375 cells after treating with different factors for 24 h were isolated by TRIzol (Invitrogen) according to the manufacturers protocol. Complementary DNA was synthesized by reverse transcription of total RNA using an RT reaction kit (Promega, Madison, WI, USA). Real-time PCR was performed according to the manufacturers instruction. SYBR Premix Ex Taq (Takara Bio, Tokyo, Japan) was used as a DNA-specific fluorescent dye. The primer sequences were synthesized as shown in Table I.
All the reactions were repeated at least three times. Gene expression levels were calculated relative to GAPDH (glyceraldehyde-3-phosphate dehydrogenase) by using Stratagene Mx3000P software (Stratagene, La Jolla, CA, USA.
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6

RNA Isolation and RT-qPCR Analysis

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Total RNA of A375 cells and tissues was isolated by TRIzol (Thermo Fisher Scientific) according to the manufacturer’s protocol. Total RNA was reverse transcribed to complementary DNA by an RT reaction kit (Promega Corporation, Fitchburg, WI, USA). Real-time polymerase chain reaction (PCR) was performed by an Mx 3000P real-time PCR system (Thermo Fisher Scientific) and SYBR Premix Ex Taq (TaKaRa) as a DNA-specific fluorescent dye. Primer sequences for detection of messenger RNA (mRNA) expression were synthesized as shown in Table 2.
All the reactions were repeated at least three times. Gene expression levels were calculated relative to GAPDH by using StratageneMx 3000P software.
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7

Quantitative Expression Analysis of mRNA

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Total RNA of tissues after treating with different factors for 24 h were isolated by TRIzol (Invitrogen, USA) according to the manufacturer's protocol. Complementary DNA was synthesized by reverse transcription of total RNA using a RT reaction kit (Promega, USA). Quantitative real-time PCR was used to determine levels of mRNAs using the Assays-on-Demand Taqman Gene Expression Assays (Applied Biosystems, Foster City, CA, USA) according to the procedure previously described. Results were conducted in triplicate in at least five independent experiments. SYBR Premix Ex Taq (TaKaRa, Japan) was used as a DNA-specific fluorescent dye. Primer sequences were synthesized as shown in table 1.
All the reactions were repeated at least three times. Gene expression levels were calculated relative to GAPDH (glyceraldehyde-3-phosphate dehydrogenase) by using Stratagene Mx 3000P software.
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8

RT-PCR Analysis of B7-H6 Knockdown

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RT-PCR was performed to confirm the knockdown of B7-H6 expression at the mRNA level in HepG2 and SMMC-7721 cells. Total RNA was extracted using TRIzol (Invitrogen) reagent, and purified RNA was then reversely transcribed to cDNA using an RT reaction kit (Promega). RT-PCR was conducted using the ABI 7600 system (Applied Biosystems, USA), and SYBR Green was used as a DNA-specific fluorescent dye. Human GAPDH was selected as a housekeeping gene. Primers were synthesized as follows: GAPDH forward: 5′-TGACTTCAACAGCGACACCCA-3′ and GAPDH reverse: 5′-CACCCTGTTGCTGTAGCCAAA-3′; and human B7-H6 forward: 5′-CTCCTGATTCTGCTGTGGGC-3′ and human B7-H6 reverse: 5′-GTCGGAATGCCTCTTGGTGA-3′. In addition, RT-PCR products were confirmed by electrophoresis on a 1.8% agarose gel containing 0.1% ethidium bromide. Images of the fluorescent bands were captured using a Bio-Rad gel documentation system.
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9

Quantitative Gene Expression Analysis

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Total RNA of cells treated with or without OMT for 24 h were extracted using TRIzol (Invitrogen) according to the manufacturer’s protocol. One microgram of total RNA was reverse transcribed to cDNA in a total volume of 20 μl system using a RT reaction kit (Promega). Real-time PCR was performed using an Mx 3000P real-time PCR system (Applied Biosystems) according to the manufacturer’s instruction and SYBR Premix Ex Taq (TaKaRa) as a DNA-specific fiuorescent dye. PCR was carried out for 50 cycles of 95°C for 10 s and 60°C for 30 s. Primer sequences for detection of mRNA expression were synthesized as the Table 1.
All the reactions were repeated at least three times. Gene expression levels were calculated relative to the housekeeping β-actin by using Stratagene Mx 3000P software.
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10

Quantifying B7-H6 mRNA Knockdown by RT-PCR

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Real-time reverse transcriptase-polymerase chain reaction (RT-PCR) was performed to confirm the knockdown of B7-H6 mRNA expression. Total RNA from U87 and U251 cell lines was extracted using TRIzol (Invitrogen) reagent, and was then reverse transcribed into cDNA by using RT reaction kit (Promega). Real-time PCR was performed by using the ABI 7600 system (Applied Biosystems, USA) according to the manufacturer's instruction and SYBR Green was used as a DNA-specific fluorescent dye. Primer sequences for detection of the reference gene, GAPDH and the target gene B7-H6 were synthesized as follows, the human GAPDH, forward primer: 5’-TGACTTCAACAGCGACACCCA, and the reverse primer: 5’-CACCCTGTTGCTGTAGCCAAA-3’; the human B7-H6 forward primer: 5’-CTCCTGATT CTGCTGTGGGC-3’, and reverse primer: 5’-GTCGG AATGCCTCTTGGTGA-3’. The RT-PCR products for B7-H6 and GAPDH genes were also confirmed by using electrophoresis on 1.8% agarose gel containing 0.1% ethidium bromide. Images of the fluorescent bands were captured using Bio-Rad gel documentation system.
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