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43 protocols using anti cd45 percp

1

Comprehensive Immune Monitoring After Allogeneic Stem Cell Transplantation

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CMV serostatus was assessed in all patients and donors before alloSCT. After transplant CMV was monitored routinely by PCR on peripheral blood samples in all patients. Absolute numbers of circulating total (CD3+), CD4+CD8- and CD4-CD8+ T-cells, B cells and NK cells were measured routinely at predefined timepoints on anticoagulated fresh venous blood by flow cytometry with bead calibration (Trucount tubes, BD Biosciences). Samples were measured either on a FACSCalibur using anti-CD3-APC, anti-CD4-FITC, anti-CD8-PE, and anti-CD45-PerCP or with anti-CD3-FITC, anti-CD16-PE, anti-CD19-APC, anti-CD45-PerCP, and anti-CD56-PE, or on a FACSCanto using anti-CD3-APC, anti-CD4-PB, anti-CD8-FITC, anti-CD16-PE, anti-CD19-PE Cy7, anti-CD45-PerCP, and anti-CD56-PE (all from BD). The lower detection limit was 0.5x106 cells/L.
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2

CXCR4 Expression in Leukemic Cells

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We detected the expression of CXCR4 through flow cytometry (BD FACS Canto II, Becton Dickinson, NJ) on fresh BM leukemic cells within 8 hours after sample withdrawal. Briefly, the concentration of nucleated cells in BM sample suspensions was adjusted to 1 × 106/mL by phosphate buffer saline (PBS). Then, 20 μL APC-conjugated mouse anti-human anti-CXCR4 (CD184-APC, BD pharmingen, NJ) was used in combination with anti-CD34–FITC, anti-CD117–PE, and anti-CD45–PerCP (Becton Dickinson, NJ) to stain for the experimental tube panel. Twenty microliter isotype APC-conjugated mouse anti-human IgG2, κ (Becton Dickinson, NJ) was used in combination with anti-CD34–FITC, anti-CD117–PE, and anti-CD45–PerCP (Becton Dickinson, NJ) as isotype control tube panel. After incubation for 30 minutes in dark, 2 mL of lysing solution was added and sit for 5 minutes. The tubes were centrifugated for 300 × g 5 minutes under 4 °C to discard the supernatant, and the cells were washed once with PBS. The cell suspensions were analyzed on a flow cytometer, which data were analyzed using the FACSDiva software (BD Bioscience, NJ).
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3

Multiparametric Flow Cytometry Analysis

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The fluorochrome labeled monoclonal antibodies (mAbs) anti-CD2-FITC, anti-CD3-Alexa 700, anti-CD3-PerCP, anti-CD4-V450, anti-CD4-PE, anti-CD8-APC Fluor 780, anti-CD8-PacBlue, anti-CD16-FITC, anti-CD20 PECy7, anti-CD19-V450, anti-CD20-APCCy7, anti-CD25-PEcy7, anti- CD28-PE, anti-CD28-FITC, anti-CD38-PE, anti-CD39-FITC, anti-CD45-PerCP, anti-CD56-APC, anti-CD57-FITC, anti-CD197-PECy7, anti-HLA-DR, anti-IgM, anti-IgD, anti-Ki67-FITC, anti-Bcl-2-PE, anti-TNF-α-PE, anti-TNF-α-APC, IFN-γ-PcpCy5.5, and IL-2-PECy7 were purchased from BD Biosciences (Franklin Lakes, NJ). Anti-CD45RA-QDOT655 and anti-CD69-FITC mAb were obtained from Invitrogen (Carlsbad, CA). Anti-CD8-Alexa780, anti-CD27-Alexa Fluor 700, and anti-CD38-eFluor 650NC were obtained from E-bioscience (San Diego, CA). Anti-CD24-PEcy7 and anti-CD279-PE (PD-1) were purchased from Biolegend (San Diego, CA).
Human EBV protein and CMV peptide pool of pp65 sequence consisting of 138 peptides (15 mers with 11 amino acid overlaps) was purchased from JPT Peptide Technologies (Berlin, Germany).
All patients were DSA-free with a calculated panel reactive antibody (PRA) ≤20% at enrollment. Patient samples were assessed for donor-specific alloantibody post-transplantation as described previously (18 (link)).
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4

Isolation and Quantification of Corneal Immune Cells

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24 hours after wounding, mice were sacrificed and eyes enucleated. Dissected corneas were cut into quarters and digested in Collagenase Type 1 (Sigma) 820 U/mL in DMEM/F12 + 10% fetal bovine serum at 37°C for 1 hour, vortexing every 20 minutes. Digests were triturated until tissue was completely broken up, and digestion continued for an additional 20 minutes. Cell suspensions were filtered through a 70 μm nylon mesh and pelleted at 340 x g for 10 minutes. Cells were stained in 50 μl staining buffer (phosphate buffered saline, 1% fetal bovine serum) by addition of Fc-Block, anti-CD45-PerCP, anti-Gr1-PE (clone RB6-8C5), and anti-CD11B-AF647 (all BD Biosciences) at 1:50 for an incubation of 30 minutes on ice in the dark. Stained cells pooled from 6 corneas were washed by centrifugation from staining buffer and fixed in 300 ul 1% paraformaldehyde in PBS before analysis by flow cytometry on a FACS Aria III Flow Cytometer (BD Biosciences). For determining cell counts in individual corneas, each sample was spiked with 20,000 fluorescent counting beads (CountBright absolute counting beads; Invitrogen). and the bead count was used to calculate absolute numbers of immune cells per cornea[31 (link)].
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5

T-cell Characterization in Lamina Propria and Lung

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Cells from lamina propria and lungs were stimulated with PMA (Sigma-Aldrich) 50 ng/ml, Ionomycin (Sigma-Aldrich) 500 ng/ml and Brefeldin A (Biolegend, San Diego, CA, USA) 5 µg/ml for 4 h at 37 °C and 5% CO2. T-cell surface staining was performed for 30 min at 4 °C using the following antibodies diluted in PBS: anti-CD45 PercP (BD, Franklin Lakes, NJ, USA), anti-CD4 APCCy7 (Biolegend) and anti-CD8 FITC (Biolegend). Cells were then fixed and permeabilised using the Cytofix/Cytoperm kit (BD). Intracellular staining was performed for 30 min at 4 °C with the following antibodies diluted in Perm/wash buffer (BD): anti-CD3 APC (BD), anti-IL-9 PE (Biolegend) and anti-IFN-γ PECy7 (Biolegend). Lung cells were also stained for mast cell detection with anti-CD45 PercP and anti-CD117 APC (Biolegend). Samples were acquired using a FACS Canto II (BD) and analysed using FlowJo software (version 9.0.2, Tree Star).
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6

Multicolor Flow Cytometry of Bone Marrow

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Freshly isolated bone marrow cells were resuspended in ice-cold FACS buffer (PBS added with 2% FBS) containing a mix of surface marker-specific antibodies carrying different fluorescent tags. For BMSC detection, the following BD Biosciences antibodies were used: anti-cd45 PerCP, anti-cd31 PerCP-eFluor 710, anti-cd105 eFluor450, and anti-cd29 APC, all diluted 1:500. For hematopoietic cell analysis, the following BD Biosciences antibodies were used: anti-cd45 APC Cy7, anti-cdllb AF700, anti-Ly6C BV605, anti-Ly6G BV786, and anti-F4/80 PE-Cy5, all diluted 1:100.
Cells were incubated at +4°C with agitation for 30 min with the above antibodies, centrifuged in a table-top centrifuge at 7000 rpm for 1 minute, washed with 500 μL ice-cold FACS buffer, centrifuged again, and finally resuspended in 250 μL ice-cold FACS buffer for analysis. Flow cytometry was performed at the University of Rochester Core Facility using BD Biosciences LSRII flow cytometer.
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7

Multiparametric Phenotyping of Monocyte Subsets

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Immunofluorescence staining of monocyte subsets and their co-stimulatory molecules were performed by using fluorochrome-conjugated monoclonal antibodies (mAbs) consisted of anti-CD3-fluorescein isothiocyanate (FITC) (clone SK7, T-cell marker); anti-CD19-PE-Texas Red (clone SJ25-C1); anti-CD86-PE/Dazzle594 (clone IT2.2); anti-CD45-peridinin chlorophyll protein (PerCP) (clone 2D1); anti-CD275(ICOSL)-allophycocyanine (APC) (clone 2D3); anti-CD3-allophycocyanin/cyanine 7 (APC-Cy7) (clone SK7); anti-CD19-APC-Cy7 (clone HIB19); anti-CD56-APC-Cy7 (clone HCD56); anti-CD40-Pacific Blue (clone 5C3); anti-CD16-BV510 (clone 3G8); anti-CD14-BV570 (clone M5E2) and anti-CD80-BV605 (clone 2D10). Human IgG isotype control antibodies conjugated with APC, Pacific Blue, PE/Dazzle594 and BV605 were used for each specific co-stimulatory molecules. Fluorochrome-conjugated mAbs were purchased from Biolegend (San Diego, CA, USA), except anti-CD3-FITC and anti-CD45-PerCP that were purchased from BD Biosciences (San Jose, CA, USA) and anti-CD19-PE-Texas Red from Southern Biotech (Birmingham, AL, USA).
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8

Multicolor Flow Cytometric Analysis of Bone Marrow

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BMMCs and BMA were analyzed for the expression of cell-surface antigens with direct three-color analysis using fluorescein isothiocyanate (FITC)-conjugated, phycoerythrin (PE)-conjugated and peridinin chlorophyll protein complex (PerCP)-conjugated monoclonal antibodies as previously reported [33 (link), 34 (link)]. The following antibodies were used for analysis: immunoglobulin G1 control PE (eBioscience, San Diego, CA, USA), immunoglobulin G1 control PerCP (Becton Dickinson, San Jose, CA, USA), immunoglobulin G1 control FITC (BD Bioscience, Franklin Lakes, NJ, USA), anti-CD34-FITC (BD Bioscience), anti-CD34-PerCP (Becton Dickinson), anti-KDR-PE (R&D Systems, Minneapolis, MN, USA), anti CD45-PerCP (BD Bioscience), and anti-CD133–PE (Miltenyi Biotec, Bergisch Gladbach, Germany). The quantification of total mononuclear cells in BMMCs and BMA was determined by Turk’s solution. For FACS analysis, 5 × 105 events were acquired and scored with a FACSCalibur analyzer (Becton Dickinson). Data were processed using the Macintosh CELLQuest software program (Becton Dickinson).
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9

Immunophenotyping of Therapeutic MSCs

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Flow cytometry was performed using a FACSCalibur Cytometer (BD Biosciences); a phenotyping kit (MSC phenotyping kit, Miltenyi) was used to characterize the tMSCs. The following antibodies were used: anti-CD34PerCP, anti-CD45PerCP, anti-CD20PerCP, anti-CD14PerCP, anti-CD73APC, anti-CD9FITC, and anti-CD105PE (BD Pharmingen). Matched isotype controls were applied to determine background fluorescence levels.
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10

Immune Cell Profiling of Delta Variant

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Samples of EDTA anticoagulated peripheral blood (2 mL) were collected from patients with the Delta variant on admission. All the samples were tested within 6 h. Briefly, CD3+/CD4+/CD8 + T-cell, CD19 + B-cell, and CD16 + CD56 + NK-cell counts (cells/µL) were measured by multiple-color flow cytometry with human monoclonal anti-CD3-fluorescein isothiocyanate (FITC), anti-CD8-phycoerythrin (PE), anti-CD45-PerCP, anti-CD4-allophycocyanin (APC), anti-CD16-PE, anti-CD56-PE, and anti-CD19-APC antibodies (BD Multitest) according to the manufacturer’s instructions. The cells were analyzed on a BriCyte E6 flow cytometry system (Mindray).
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