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24 protocols using pt308 akt

1

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

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We used Proteo-JETTM Mammalian Cell Lysis Reagent (Thermo) to lyse cells. Crude lysates were centrifuged at 14,000g for 20 min at 4 °C. Lysate proteins were mixed with loading buffer and denatured by heating at 100 °C for 10 min. Proteins were resolved by SDS-PAGE and transferred to a PVDF membrane (Millipore, Billerica, MA, USA), blocked with 5% nonfat milk, and then incubated with primary antibodies overnight at 4 °C on a shaking table. Primary antibodies targeting E-cadherin (1:1000), Vimentin (1:1000), AKT (1:1000), AKT-pS473 (1:1000), AKT-pT308 (1:1000), ERK (1:1000), p-ERK (1:1000) (Cell Signaling Technology, Danvers, MA, USA), α-SMA (1:1000), TBK1 (1:1000) (Abcam, Cambridge, MA, USA), and GAPDH (Beyotime, China) were used. Then, the blots were incubated with the secondary antibody, HRP-conjugated IgG (Beyotime, dilution 1:5000), for 1 h at room temperature. Specific bands for each protein were detected with an Image Quant LAS4000 imager (GE Healthcare Life Science, Pittsburgh, PA) using Amersham ECL (Millipore). Densitometric analysis of expression was performed using ImageJ software (National Institutes of Health, Bethesda, MD). The expression of each molecule was normalized to GAPDH expression.
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2

Protein Extraction and Western Blot Analysis

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Tissues or cells were homogenized in a lysis buffer containing 100 mM Tris (Merck, Burlington, Massachusetts) pH7.5, 2 mM EDTA (Sigma-Aldrich, St. Louis, Missouri), 2 mM EGTA (Sigma-Aldrich, St. Louis, Missouri), 150 mM NaCl (Sigma-Aldrich, St. Louis, Missouri), 1% Triton X-100 (Fluka Chemie, Buchs, Switzerland), cOmplete inhibitor cocktail (Sigma-Aldrich, St. Louis, Missouri) and PhosSTOP (Sigma-Aldrich, St. Louis, Missouri). Protein concentration was determined by the Bradford assay (Bio-rad), and equal amounts of protein were separated by SDS-PAGE, and transferred onto nitrocellulose membranes (GE Healthcare, Chicago, Illinois). Antibodies used in this study were as follows: AKT (Cat#4685 or Cat#2920), AKT-pS473 (Cat#4060), AKT-pT308 (Cat#13038), PRAS40-pT246 (Cat#2997), PRAS40 (Cat#2691), HK2 (Cat#2867), S6-pS240/244 (Cat#5364), S6 (Cat#2217), FASN (Cat#3189), ACC (Cat#3662), HA tag (Cat#3724) and ChREBP (Cat#58069) from Cell Signaling Technology (Danvers, Massachusetts), GLUT4 (Cat# NBP2-22214, Bio-Techne, Abingdon, United Kingdom), HSP90, (Cat#sc-13119, Santa Cruz Biotechnology, Dallas, Texas), CALNEXIN (Cat#ADI-SPA-860-F, Enzo Life Sciences, Farmingdale, New York) and ACTIN (Cat#MAB1501, Merck, Burlington, Massachusetts). For quantification, the specific signals were normalized to a loading control.
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3

Antibody-Based Protein Analysis

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Antibodies were purchased from Cell Signaling Technologies (USA): β-Tubulin (number 2128), rpS6-P(S235/236) (number 2211), 4E-BP1-nonP(T46) (number 4923), 4E-BP1 (number 9644), Akt-P(S473) (number 4060), Akt-P(T308) (number 4056), Akt (number 4685), Paxillin-P(T118) (number 69363), Paxillin (number 12065), and Actin (number 4970). Monoclonal mouse anti-human MVP (LRP-56) antibodies were purchased from Enzo (cat. no. ALX-801-005-C050, Enzo).
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4

Characterization of Oncogenic Signaling Pathways

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X-370 were synthesized with a purity >99% by Xcovery (West Palm Beach, FL, USA) and AZ628, PLX4032, AZD6244, BX-912, MK-2206, Rapamycin, AZD8055 (Selleck, Houston, TX), BI-D1870 (Enzo Life Sciences, Farmingdale, NY) were dissolved in DMSO at 10 mM and stored at −20°C. Antibodies against Akt, Akt-pS473, Akt-pT308, S6k1, S6k1-pT389, Erk1/2, Erk1/2-pT202/Y204, p110δ and MEK1/2-pS217/S221 were from Cell Signaling (Cell Signaling, Danvers, MA). Antibodies against Gab1, CD19, MEK1 and PDK1 were from Eptomics (Hangzhou, China). Antibodies against β-Actin and GAPDH were from Sigma-Aldrich (Sigma-Aldrich, MO) and KangChen Bio-tech (Shanghai, China) respectively. IGF-1, MCP-1 and M-CSF were from R&D systems (Minneapolis, MN) and LPA was from Sigma-Aldrich (St. Louis, MO). Raji and SU-DHL-6 cells were obtained from ATCC (Manassas, VA). Raji-R cells were kindly provided by Yajun Guo (Shanghai Jiao Tong University, Shanghai, China) and MEF cells were generous gift from Jean Zhao (Dana-Farber Cancer Institute, Boston, MA). Rh30 cells were obtained from Dr. P.J. Houghton (St. Jude Children's Research Hospital, Memphis, TN, USA).
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5

Comprehensive Lipid Metabolism Signaling Pathway

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Antibodies to ACC1-pS79, ACC1, FASN, SCD1, Tubulin, TBP, GAPDH, AKT-pS473, AKT, GSK3β-pS21/9, GSK3β, TSC2-pT1462, TSC2, mTOR-pS2448, mTOR, S6K-pT389, S6K, S6-pS240/244, S6, 4E-BP1-pS65, 4E-BP1, β-actin, LRP6-pS1490, LRP6, TCF7L2, β-catenin, β-catenin-pS33/37/T41, IGF1R, AKT-pT308, and Lamin B were purchased from Cell Signaling. Antibodies to apoB, SCAP, Insig1, Insig2, Sp5, Sp1 were purchased from Santa Cruz Biotech (Santa Cruz, Ca, USA). Antibodies to MTP, SREBP1, SREBP2, IRS1 were purchased from BD Biosciences. Antibodies to ACAT2 and IGF1 were purchased from Novus. Antibodies to ELOVL6 (Thermo Scientific), DGAT1 (Bio Vision), GPAT1 (GeneTex), LXRα (Abcam), HMGCR (Upstate), and IRS1-pY612 (Invitrogen) were used for western blotting.
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6

Antibody Use in Protein Signaling Study

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The following antibodies from Cell Signaling Technology (CST) were used in this study (all rabbit polyclonal antibodies, unless otherwise noted): Akt (#9272); Akt P-S473 (#4060; rabbit mAb D9E XP); Akt P-T308 (#4056, rabbit mAb 244F9); TBK1 (#3013; or #3504, rabbit mAb D1B4); TBK1 P-S172 (#5483, rabbit mAb D52C2 XP); S6K1 (#9202); S6K1 P-T389 (#9234, rabbit mAb 108D2; #9206, mouse mAb IA5); mTOR (#2972); MAPK (#9102); MAPK P-T202/Y204 (#4370, rabbit mAb D13.14.4 E XP); GST (#2624; mouse mAb 26H1); IgG-conjugated Sepharose beads (#3423); Rictor-conjugated Sepharose beads (#5379). The following antibodies were from other commercial vendors: mTOR P-S2481 (Millipore Sigma #09-343); Myc (Millipore Sigma #05-419, mouse mAb 9E10); HA.11 (Bio Legend # 901513, mouse mAb 1612B). The following custom, anti-peptide polyclonal antibodies were generated by us in-house with assistance from a commercial vendor: Rictor (amino acids 6–20; Covance; as described (72 (link), 73 (link))); mTOR (amino acids 221–237, Covance; as described (72 (link), 73 (link))); mTOR P-S2159 (Millipore; as described (13 (link))).
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7

Western Blot Analysis of Intracellular Signaling

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Cells were treated with vehicle or the test compound, harvested by scraping and lysed as described for the intracellular signaling array. Protein concentrations were quantified with a Pierce Coomassie Plus Assay Kit (Life Technologies) and equal amounts of protein were separated by SDS-PAGE on NuPAGE Bis-Tris gels (Life Technologies). Proteins were transferred to PVDF membranes (EMD Millipore, Billerica, MA, USA) which were subsequently blocked with Odyssey Blocking Buffer (LI-COR Biosciences) in tris-buffered saline. Membranes were probed with antibodies for P-mTOR, mTOR, P-S6K, S6K, P-RPS6, RPS6, P-S473-Akt, P-T308-Akt or pan Akt (Cell Signaling Technology, Danvers, MA, USA) diluted in Odyssey Blocking Buffer. Membranes were incubated with appropriate IRDye 680 or IRDye 800 secondary antibodies (LI-COR Biosciences) and near-infrared fluorescence signals were captured on an Odyssey FC (LI-COR Biosciences). Signal intensities were quantified with ImageStudio (LI-COR Biosciences).
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8

Antibody-based Adipose Tissue Characterization

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Antibodies to IRβ, P-T308-Akt, P-S473-Akt and Pan-Akt (all used at 1/1000 dilution) were from Cell Signaling. UCP1 antibody (#10983) was from AbCam (used at 1/100 for IHC and at 1/1000 for western blot). Live/dead Blue (Molecular Probes, L23105), CD31-PE-CY7 (eBioscience, 25-0311)(used at 1/1000), CD45-PE-CY7 (eBioscience, 25-0451) (used at 1/1000), CD29-AlexaFluor700 (Biolegend, 102218)(used at 1/400), CD34-AlexaFluor647 (Biolegend, 119314)(used at 1/200), Sca1-Pacific Blue (BD Bioscience, 560653)(used at 1/1000), CD45-FITC (eBioscience, 11-0451) (used at 1/200) were used for flow cytometry. CL316,243 was from Tocris.
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9

Multitarget Immunofluorescence Signaling Assay

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Antibodies to p-ERK1/2, ERK1/2, p-T308-AKT, AKT, p-Y705-STAT3, JAK1 were purchased from Cell Signaling Technology (Beverly, MA, USA). STAT3 and p-T1022-JAK1 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies to HAS2 and C5R1 were purchased from Abcam (Cambridge, UK). 4,6-diamidino-2-phenylindole (DAPI) were purchased form Sigma (St Louis, MO, USA). rh-C5a protein and antibodies to CD105 and C5a were purchased from R&D Systems (Minneapolis, MN, USA). Chemical inhibitors specific to MEK (U0126), PI3K (LY294002), JAK1 (P6) and STAT3 (WP1066) were purchased from Calbiochem (San Diego, CA, USA). Anti-Goat Alexa Fluor 488, anti-mouse Alexa Fluor 546 were purchased from Invitrogen (Carlsbad, CA, USA). Anti-mouse IgG-HRP, anti-goat IgG-HRP and anti-rabbit Ig-HRP were purchased from Santa Cruz biotechnology (Santa Cruz, CA, USA). HA (Low molecular weight; 15-40 kDa) was purchased from R&D systems (Minneapolis, MN, USA).
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10

Antibody Optimization for Western Blot and Immunofluorescence

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Antibodies for western blotting: AKT (#4691; 1:2000), pS473-AKT (#4056; 1:1000), pT308-AKT (#4058; 1:500), PTEN (#9552; 1:1000) were obtained from Cell Signaling Technologies, ARG1 (#ab133543; 1:500), human ARG2 (#ab137069; 1:1000), mouse ARG2 (#bs-11397R; 1:2000) from Bioss Antibodies and GAPDH (#sc-25778; 1:5000) from Santa Cruz. Antibodies for immunofluorescence were from Cell Signaling Technologies (pS473-AKT #4060; 1:50), abcam (α-SMA #ab5694; 1:200), Vector Laboratories (Biotinylated DBA-Lectin #B-1035; 1:250), and Sigma-Aldrich (α-Amlyase #A8273; 1:1000). Human recombinant Insulin (Roche, 11376497001), human recombinant IGF-1 (PeproTech, 100-11), D-Glucose (Sigma-Aldrich, G7021) and a chemically defined lipid mixture (sigma L0288) were used to treat cultured cells.
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