The largest database of trusted experimental protocols

10 protocols using lysis solution

1

Hippocampal and Prefrontal Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissues from hippocampal and prefrontal regions were cut into small pieces, placed in EP tubes, homogenized, and lysis solution (Beyotime, Nanjing, China, main components 20 mM Tris (pH 7.5), 150 mM NaCl, 1% Triton X‐100, 1 mM PMSF, sodium pyrophosphate, sodium β‐glycophosphate, ethylene disodium EDTA, Na3VO4, and leucine), and the supernatant was collected by centrifugation at 12,000 rpm for 10 min. Protein concentrations were determined using the BCA Protein Kit. Based on the protein quantification results, a corresponding volume of the total protein sample was added to 5 × protein loading buffer. Following electrophoresis, the polymeric protein bands separated from the gel were shifted onto polyvinylidene difluoride (PVDF) membranes by transfer electrophoresis. The membranes were incubated with primary and secondary antibodies in turn, and then subjected to radiographic autoradiography. The intensities of the spots were analyzed by Image Pro plus 6.0. Data were obtained from three rats per group. The mean values for each group were calculated and plotted.
+ Open protocol
+ Expand
2

Western Blot Protein Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell pellets were resuspended in lysis solution (Beyotime, Shanghai, China) supplemented with protease inhibitors (Biotool, Houston, TX, USA). Samples were separated on 10% SDS-PAGE gel and then transferred to 0.22 μm PVDF membranes (Millipore, Billerica, MA, USA). The membranes were then immersed in a 5% milk solution for 60 min and exposed to primary antibodies for 16 h at 4 °C before adding HRP-conjugated secondary antibodies for 1 h at room temperature. After the membranes were washed, chemiluminescence reagents (Yeason Shanghai, China) were added and detection was performed using the Chemi Doc Imaging System (Bio-Rad, Hercules, CA, USA). Details of the antibodies used are shown in Supplementary Table S1.
+ Open protocol
+ Expand
3

Western Blot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were placed in a lysis solution (Beyotime Biotech, Inc., Shanghai, China) along with a protease inhibitor before centrifugation at 12,000 g at 4 °C for 20 min. BCA was used to calculate total protein concentrations. Equivalent amounts of protein were separated by SDS-PAGE and transferred to PVDF membranes (cat no. 0000199759) (Merck Millipore; Darmstadt, Germany). The membranes were placed into blocking buffer for 2 h at room temperature and incubated with primary antibodies (p-AKT, AKT, p-PI3K, PI3K, PCNA; 1:1000 dilution) or GAPDH antibody (1:5000 dilution) overnight at 4 °C. In addition, the membranes were washed three times with TBST (cat no. T1081; Solaribo) before incubation with secondary antibody at a dilution of 1:5000 for 1 h at 37 °C. The blots were developed using a chemiluminescence kit (cat no. P0018M, Beyotime Biotech, Inc.) and visualized using the Bio-Rad Chemi Doc XRS imaging system (Bio-Rad; Hercules, CA, USA). ImageJ software was used to quantitate band intensities. The expression of GAPDH was used as an internal control.
+ Open protocol
+ Expand
4

Protein Expression Analysis in Myocardial Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were extracted from myocardial tissue using a lysis solution (Beyotime Biotechnology, China). The samples were resolved by SDS–polyacrylamide gel electrophoresis, and transferred to polyvinylidene fluoride membranes (Merck Millipore, Billerica, MA, USA). All the blots were cut prior to hybridization with antibodies. Primary antibodies against SERCA2a (1:40,000) (Abcam, Cambridge, UK), α-fodrin (1:1000) (Abcam, Cambridge, UK), JPH2 (1:1000) ( Santa Cruz Biotechnology, Santa Cruz, CA, USA) and GAPDH (1:5000) ( Proteintech Group , China)were immuno-blotted overnight at 4℃. After this, membranes were immuno-blotted at room temperature for 1 h with corresponding secondary antibodies (1:5000) (ZSGB-BIO, Beijing, China). A chemiluminescence detection system (Tanon Imaging System, Tanon, Shanghai, China) was used to visualize protein bands. The data were analyzed on ImageJ 1.51 (NIH, USA).
+ Open protocol
+ Expand
5

Liver Protein Extraction and Immunoblotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were abstracted from liver tissue using a lysis solution (Beyotime, Shanghai, China) with 0.5 mM PMSF and phosphatase inhibitors. Protein concentrations were determined to calculate the loading amount. SDS-PAGE was performed on proteins using a 10% acrylamide gel. The specific operation process of protein immunoblotting also referred to a previous study [23 (link)]. Antibodies against t-Akt, p-Akt, SREBP-1c, and β-actin were from Beyotime Biotech, Shanghai, China. The secondary antibodies were from Proteintech Group, Inc., Wuhan, China.
+ Open protocol
+ Expand
6

Quantifying MDA Levels in NB Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The malondialdehyde (MDA) level of NB cells was quantified using an MDA assay kit (S0131S, Beyotime; China). Following treatment with serial dilutions of ATO for 24 h, the cells were lysed using Lysis Solution (P0013; Beyotime, China) and subsequently centrifuged. The MDA working solution was prepared according to the manufacturer's instructions. The test solution was then subjected to boiling for 40 min, cooled to room temperature using running water, and centrifuged to obtain the supernatant. Finally, the absorbance at 532 nm was measured using a multimode reader (Molecular Devices LLC).
+ Open protocol
+ Expand
7

Lipid Peroxidation Assays for Ferroptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Malondialdehyde (MDA), a product of membrane lipid peroxidation, shows a positive correlation with ferroptosis. A Lipid Oxidation (MDA) Assay Kit (S0131S; Beyotime) was used to detect MDA levels in SFs. Briefly, the cells were lysed using Lysis Solution (P0013; Beyotime) and centrifuged. The supernatant was collected and the protein concentration was detected using a BCA Protein Assay Kit (P0010; Beyotime). After preparing the MDA working solution in accordance with the kit instructions, a sample aliquot or blank control was added for determination. The test solution was boiled for 15 min, cooled to room temperature, and centrifuged to obtain the supernatant. Finally, the absorbance was measured at 532 nm using a multimode reader (Spark Cyto, TECAN).
C11-BODIPY 581/591 is a lipid-soluble fluorescent probe used to indicate lipid peroxidation in living cells. According to the manufacturer’s instructions, an appropriate volume of C11-BODIPY 581/591 (RM02821, ABclonal) was added to the cells and incubated for 30 min. After removal of the excess dye by washing with PBS, a cell pellet was obtained by 0.25% trypsin digestion and centrifugation. The cells were then resuspended in PBS containing 5% fetal bovine serum (FBS) and detected by flow cytometry (CytoFLEX LX, Beckman Coulter).
+ Open protocol
+ Expand
8

Western Blot Analysis of VEGF-A Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells were collected, and the total intracellular protein was extracted. Next, 80 μL of lysis solution (Beyotime) was added, and the sample was vortexed for sufficient lysis. The sample was centrifuged for 5 min (4 °C, 12,000 rpm), the supernatant was carefully aspirated and collected in another EP tube, and the total protein concentration was determined using the BCA method. After sample preparation, equal amounts of a sample protein (10 μg) were loaded onto an SDS–PAGE gel (10% separating gel, 5% stacking gel). After electrophoresis, the samples were transferred onto a nitrocellulose membrane. The membranes were blocked in blocking buffer for 1 h. After that, the membranes were incubated with primary antibodies against VEGF-A (Boster, Wuhan, China) and α-tubulin (Beyotime), followed by secondary antibodies coupled with horseradish peroxidase for 1 h. Reactive bands were detected with an ECL Western Blot Detection Kit (Boster) and visualized with a Tanon Imager program (Tanon, Shanghai, China). Non-saturated bands were selected to perform densitometric quantification using ImageJ software.
+ Open protocol
+ Expand
9

Western Blot Analysis of Oxidative Stress Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Renal tissue was treated with lysis solution (Beyotime Biotechnology, Shanghai, China) and ultrasonicated. Total protein was separated by SDS-PAGE and transferred onto 0.45-μm polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). After blocking in Tris-buffered saline containing 5% non-fat milk for 1 h at 25 °C, the membranes were incubated for 16–18 h at 4 °C with the following antibodies: anti-4-hydroxynonenal (4-HNE; 1:1000; Abcam), anti-caspase3 (1:1000; Cell Signalling Technology, Danvers, MA, USA), anti-Bcl-2 (1:1000; Abcam), anti-Bax, anti-catalase (CAT, 1:500; Sangon Biotech, Shanghai, China), anti-Nrf2 (1:1000; Abcam), anti-NQO1 (1:8000; Abcam), anti-heme oxygenase 1 (HO-1; 1:1000; Abcam), anti-SOD2 (1:500; Sangon Biotech), anti-Akt, anti-phospho-Akt, anti-PI3K, anti-phospho-PI3K, and β-actin (1:2000, Cell Signalling Technology). The membranes were subsequently incubated with the secondary antibody for 1 h at 25 °C, and protein bands were detected by electrochemiluminescence (Millipore). ImageJ software (NIH, Bethesda, MD, USA) was used to analyse the protein band intensities.
+ Open protocol
+ Expand
10

Aloe-emodin Dose-dependent Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
HCT116 cells were seeded in a 6-well plate, treated with different concentrations of aloe-emodin for 24 hours, washed with pre-chilled PBS, and then lysed in lysis Solution (Shanghai Beyotime Biotechnology Co., Ltd., Shanghai, China) on ice for 30 minutes then collected the cells. The protein concentration was established by the BCA method. The proteins were separated by 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to the PVDF membrane. The membrane was blocked with 5% skimmed milk powder (Shanghai Yuanye Biological Technology Co., Ltd. Shanghai, China.)and then with the primary antibody overnight at 4 °C.Then the membrane was washed in TBST and incubated with the appropriate horseradish peroxidase-conjugated secondary antibody for 2 h at 37℃. Finally, the immunoreactive band by using ECL (A nity Biosciences, Changzhou, China)exposed on the Chemiluminescence digital imaging system (Bio-Rad, USA).Then use Image J 1.51 k software to qualitatively and quantitatively analyze the protein bands.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!