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4 protocols using anti lc3 2 1

1

Gastric Cancer Cell Line Cultivation

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Human gastric cancer cell lines, including BGC-823, MGC, SGC-790, HGC, and MKN-45 were purchased from the American Type Culture Collection in 2015. All cells were cultured in DMEM, supplemented with 10% fetal bovine serum, and were grown in a humidified atmosphere containing a 95% air, 5% CO2 mixture at 37°C. Anti-AM, anti-P-JNK, anti-JNK, anti-P-PKA, anti-PKA, and anti-LC3-II/I antibodies were obtained from Abcam Technology (Cambridge, MA). Anti-cleaved-caspase3, anti-caspase3, anti-P-AKT, anti-AKT, anti-Beclin, and anti-CRLR antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-GAPDH, anti-Bax, anti-Bcl2, anti-RAMP1, anti-RAMP2, and anti-RAMP3 antibodies were obtained from Cell Signaling Technology (Beverly, MA).
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Western Blot Analysis of Autophagy Markers

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Hepatopancreas was lysed in lysis RIPA buffer (Beyotime, China) for 30 min on ice. After incubation, lysates were centrifuged (14,000 × g, 15 min) at 4°C, and each supernatant was collected. Total protein was quantified using the traditional BCA method. Fifty micrograms of protein was separated by 15% sodium dodecyl sulfate–PAGE and electrotransferred onto polyvinylidene difluoride membrane (Bio-Rad). The membranes were incubated in 20 mM tris-buffered saline (TBS) containing 5% BSA for 1 h at room temperature. The membranes were washed with tris-buffered saline and tween 20 (TBST) for 5 min and incubated with the anti-LC3I/II (1:500, Abcam), beclin1 (1:1,000, CST), TOR (1:500, CST), p-TOR (1:500, CST), and actin (1:1,000, CST) at 4°C overnight in a shaking incubator and then washed with (3 × 5 min per wash), and the protein was detected using alkaline phosphatase (1:2,000) as the secondary antibody was incubated for 2 h at room temperature. The membrane was detected with 5-bromo-4-chloro-3-indolyl-phosphate/nitroblue tetrazolium substrate (Sangon Biotech, Shanghai, China). To quantify the signals, gray intensities of Western blots were calculated using ImageJ7.
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Protein expression analysis in EMT

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Protein concentration was measured using a bicinchoninic acid Protein Assay Reagent (Pierce; Thermo Fisher Scientific, Inc.). Total protein (20 µg/well) was separated via 10% SDS-PAGE and then transferred onto PVDF membranes at 250 mA for 1 h. Membranes were blocked at 37°C for 2 h with 5% non-fat milk in Tris-buffered saline/0.1% Tween-20 and then incubated at 4°C overnight with the following primary antibodies: Anti-ITGB1 (1:1,000; cat. no. ab183666; Abcam), anti-LC3 II/I (1:1,000; cat. no. ab128025; Abcam), anti-epithelial (E)-cadherin, anti-neural (N)-cadherin, anti-vimentin (1:1,000; cat. no. 9782T; EMT Antibody Sampler kit Cell; Cell Signaling Technology, Inc.), anti-GAPDH (1:5,000; cat. no. 10494-1-AP; ProteinTech Group, Inc.) and anti-β-actin (1:5,000; cat. no. 20536-1-AP; ProteinTech Group, Inc.). Subsequently, membranes were incubated at 37°C for 2 h with anti-rabbit IgG secondary antibodies (1:3,000; cat. no. 14708S; Cell Signaling Technology, Inc.) and the immunoblotted proteins were then detected using an Odyssey Western Blotting Detection System (Gene Tech Co., Ltd.) and Odyssey software (version 1.2).
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4

Western Blot Analysis of Apoptosis and Autophagy

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Total proteins were extracted from the collected cells. Equal amounts of protein were separated via SDS-PAGE and then transferred onto polyvinylidene fluoride (PVDF) membranes (Merck Millipore). The membranes were subsequently blocked for 2 h in Tris-buffered saline containing 0.1% Tween and 5% nonfat dry milk and then incubated with primary antibodies overnight at 4 °C. After incubation with horseradish peroxidase-conjugated secondary antibodies (1:5000; Multi Sciences Biotech, Hangzhou, China), the PVDF membranes were visualized using chemiluminescence (ECL; Biological Industries, Beit Ahemeq, Israel). The specific Caspase-3 inhibitor Z-DEVD-FMK (DEVD) and the tyrosine kinase inhibitor imatinib were obtained from Selleck Chemicals. The primary antibodies used were as follows: anti-BECLin1, anti-cleaved PARP, anti-cleaved Caspase-3, anti-Atg5, anti-Atg7, anti-UVRAG, anti-p-BCR/ABL (Tyr177), anti-Flag, anti-HA, and anti-GAPDH, purchased from Cell Signaling Technology (Beverly, MA, USA), and anti-BCR/ABL, anti-p62/SQSTM1, and anti-LC3 I/II, purchased from Abcam (Cambridge, UK).
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