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8 protocols using phospho crebs133

1

Adipose Tissue Protein Isolation and Western Blot

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Total protein from mouse adipose tissue was prepared in ice-cold lysis buffer (50 mM Tris-HCl, pH 7.5, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, 150 mM NaCl, 1 mM phenylmethylsulfonyl fluoride) supplemented with a protease inhibitor cocktail (Roche) and phosphatase inhibitors (10 mM NaF, 60 mM β-glycerolphosphate, pH 7.5, 2 mM sodium orthovanadate, 10 mM sodium pyrophosphate). Proteins were subjected to SDS-PAGE then transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were probed with following antibodies: UCP1 (Abcam, ab10983), Total OXPHOS Rodent Antibody Cocktail (Abcam, ab110413), COXIV (Cell Signaling, 4850), VDAC (Cell Signaling, 4661), HSP90 (Cell Signaling, 4874), phospho-PKA substrateS/T (Cell Signaling, 9621), phospho-CREBS133 (Cell Signaling, 9198), CREB (Cell Signaling, 9197), β-actin (Cell Signaling, 8457) and α-tubulin (Cell Signaling, 2144).
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2

Western Blot Analysis of Signaling Proteins

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Western blot was performed as previously described [23 (link)]. Antibodies of c-myc (product #5605), phospho-paxillin (Y118) (#2541), phospho-CREB (S133) (#9198), CREB (#9197), caspase-3 (#9665), caspase-9 (#9502), cleaved PARP XP (#5625), and β-actin (#4970) were purchased from Cell Signaling Technology.
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3

Profiling Phosphorylation Signaling Pathways

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Protein extracts from SK-BR-3 cells were separated by SDS-PAGE, transferred onto PVDF membranes, and probed with antibodies against phospho-AKT (S473) (Cell Signaling #9271), phospho-p53 (S46) (Cell Signaling #2521), phospho-GSK3β (S9) (Cell Signaling #5558), phospho-p44/42 (ERK1: T202/Y204; ERK2: T185/Y187) (R&D Systems #AF1018), phospho-CREB (S133) (Cell Signaling #9196), and actin (Santa Cruz Biotechnology #sc47778). Proteins were detected with HRP-conjugated secondary antibodies and visualized with the Pierce ECL Western blotting substrate (ThermoScientific) according to the manufacturer's protocol.
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4

Protein Extraction and Western Blot Analysis

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Total protein from fat tissues and differentiated primary preadipocytes was prepared in ice-cold lysis buffer (50 mM Tris-HCl, pH 7.5, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, 150 mM NaCl, 1 mM phenylmethylsulfonyl fluoride) supplemented with a protease inhibitor cocktail (Roche) and phosphatase inhibitors (10 mM NaF, 60 mM β-glycerolphosphate, pH 7.5, 2 mM sodium orthovanadate, 10 mM sodium pyrophosphate). Proteins were subjected to SDS-PAGE, and were then transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were probed with following antibodies: from Abcam: UCP1 (ab10983), MitoProfile total OXPHOS (ab110413); from Cell Signaling: COXIV (#4850), phospho-PKA substrateS/T (#9621), phospho-CREBS133 (#9198), CREB (#9212), phospho-p38T180/Y182 (#9215), p38 (#9197) α-tubulin (#2144), β-actin (#8457), GAPDH (#5174), and HSP90 (#4874). Phosphorylated CREB and p38 normalized to total CREB and p38, respectively, were quantified using ImageJ software.
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5

Comprehensive Western Blot Analysis

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Cells were lysed on ice with CelLytic MT reagent (Sigma) supplemented with protease and phosphatase inhibitors. Primary antibodies: TSC1 (#6935), TSC2 (#4308), phospho-S6 (#4858), S6 (#2217), p21 (#2947), Lamin B1 (#12586), LC3 A/B (#12741), phospho-ATG14-S29 (#92340), ATG14 (#96752), phospho-CREB-S133 (#9198), CREB (#9197), phospho-CHK1-S345 (#2348), phospho-WEE1-S642 (#4910), WEE1(#13084), PLK1 (#4513), γH2A.X (#9718), phospho-S6K-S371 (#9208), S6K (#2708), phospho-4EBP1-S65 (#9451), 4EBP1 (#9644), phospho-AKT-S473 (#4060), AKT (#4691), p53 (#2527), phospho-CDC2-T15 (#9111), CDC2 (#9116), and phospho-ATR-S428 (#2853) from Cell signaling (all used at a 1: 1000 dilution); β-tubulin (#10094-1-ap, 1: 4000), β-actin (#20536-1-ap, 1: 4000), and GAPDH (#10494-1-ap, 1: 10000) from ProteinTech; ATR (#A300-137A-T, 1: 1000) from Bethyl Lab, and CHK1 (#sc-8408, 1:1000) and Cyclin B1(#sc-245, 1: 1000) from Santa Cruz.
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6

Reagents and Antibodies for Neuronal Studies

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The CMV-mCherry-dynamitin expression vector was kindly shared by M. Meffert (Johns Hopkins, MD; Shrum et al., 2009 (link)) while the mCherry plasmid was a gift from R.Y. Tsien (UC San Diego, CA). The 4xGFP construct was a gift from W. Hampe (UMC Hamburg-Eppendorf, Hambug; Seibel et al., 2007 (link)). Commercial plasmids include Dendra2 (Evrogen) and CRTC1 (Open Biosystems, Huntsville, AL). Antibodies used in all these experiments include: rabbit polyclonal antibodies against CRTC1 (Bethyl, Montgomery, TX and Proteintech, Chicago, IL), pCRTC1(S151; Bethyl) Dendra2 (Evrogen, Moscow, Russia), TUJ1 (Covance, Princeton, NJ), Dynein heavy chain (Santa Cruz, Dallas, TX), and phosphoCREB-S133 (Cell Signaling); mouse monoclonal antibodies against PSD95 (Thermoscientific, Rockford, IL), synapsin1 (Millipore, Billerica, MA), CamKIIα (Millipore), HA-epitope (Sigma), GAPDH (Fitzgerald, Acton, MA), GFP (Clontech, Mt. View, CA), GAD67 (Millipore), and KPNB1 (ABR, Golden, CO); polyclonal chicken antibody against MAP2 (Phosphosolutions, Aurora, CO) and synaptotagmin (Chemicon, Temecula, CA). All secondary antibodies are conjugated to Alexa dyes (488, 546, 555, 568, and 633; Invitrogen).
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7

Protein Extraction and Western Blot

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Cells were harvested and disrupted in a buffer containing 50mM HEPES pH 7.5, 150mM NaCl, 1% (v/v) glycerol; 1% (w/v) Triton X-100, 1.5mM MgCl2, 5mM EGTA, protease inhibitor cocktail (Sigma-Aldrich) and phosphatase inhibitors (Sigma-Aldrich). 10 to 30μg of total protein were resolved by SDS-PAGE and transferred to the nitrocellulose membrane, which was incubated overnight with specific antibodies: vinculin, Grp78, CHOP (GADD153) IDH1 and GSS from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA); phospho-(Ser/Thr) PKA Substrate, phospho-CREB S133, total CREB, Beclin-1, LC3, Eif2α, cleaved caspase 3, phospho-Src (Y416) and total Src (36D10) from Cell Signaling Technology Inc. (Danvers, MA, USA); O-Linked N-Acetylglucosamine (Clone RL2) from Thermo Scientific (Waltham, MA, USA).
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8

Protein Extraction and Western Blot Analysis

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Total protein from fat tissues and differentiated primary preadipocytes was prepared in ice-cold lysis buffer (50 mM Tris-HCl, pH 7.5, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, 150 mM NaCl, 1 mM phenylmethylsulfonyl fluoride) supplemented with a protease inhibitor cocktail (Roche) and phosphatase inhibitors (10 mM NaF, 60 mM β-glycerolphosphate, pH 7.5, 2 mM sodium orthovanadate, 10 mM sodium pyrophosphate). Proteins were subjected to SDS-PAGE, and were then transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were probed with following antibodies: from Abcam: UCP1 (ab10983), MitoProfile total OXPHOS (ab110413); from Cell Signaling: COXIV (#4850), phospho-PKA substrateS/T (#9621), phospho-CREBS133 (#9198), CREB (#9212), phospho-p38T180/Y182 (#9215), p38 (#9197) α-tubulin (#2144), β-actin (#8457), GAPDH (#5174), and HSP90 (#4874). Phosphorylated CREB and p38 normalized to total CREB and p38, respectively, were quantified using ImageJ software.
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