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Lsm 510 meta confocal microscopy

Manufactured by Zeiss
Sourced in Germany

The LSM 510 Meta is a confocal microscopy system manufactured by Zeiss. It is designed to provide high-resolution imaging capabilities for a variety of biological and materials science applications. The system utilizes a multi-track scanning mechanism and a range of laser excitation sources to enable the acquisition of detailed, three-dimensional images of samples.

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17 protocols using lsm 510 meta confocal microscopy

1

Localization of Tryparedoxin Peroxidase in Leishmania

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Approximately 106 promastigotes of LmjF and pTRP transfectants in the stationary growth phase were washed with PBS and adhered to cover slips treated with poly-L-lysine (Sigma-Aldrich, St. Louis, MO, USA) for 15 minutes. The cells were then fixed with 3% paraformaldehyde for 10 minutes and treated with 50 mM ammonium chloride for 10 minutes. The fixed cells were permeabilized and blocked with 0.1% Triton X-100 and 0.1% BSA in PBS for 10 minutes at room temperature. To analyze sub-cellular TRP localization, anti-TRP polyclonal antibody (1:100 dilution) was visualized using an anti-rabbit secondary antibody conjugated to Alexa488 (Life Technologies, Carlsbad, CA, USA) (1:500 dilution). Anti-BiP/GRP78 (BD Bioscience, Iowa, USA) (1:500 dilution) was visualized using an anti-mouse secondary antibody conjugated to Alexa594 (Life Technologies, Carlsbad, CA, USA) (1:500 dilution). Nuclear and kinetoplast DNA were labeled using DAPI. Each step was followed by washing with PBS 10 times. The coverslips were mounted in ProLong media (Life Technologies, Carlsbad, CA, USA). All imaging was performed at the Molecular Imaging Center (MIC) of the University of Bergen, using a Zeiss LSM 510 Meta confocal microscopy. Co-localization images were edited using Photoshop 6.
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2

Fluorescent Giant Liposome Raft Imaging

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Fluorescently-stained raft-exhibiting giant liposomes were prepared essentially according to a previous report25 . The films of the lipid mixture (DOPC/DPPC/cholesterol or 1/D-(+)-glucose = 2:2:1:15) with 0.2% Rhodamin-DHPE and 1% GM1 was prepared in glass tubes, and hydrated with deionized water, followed with incubation at 37 °C for one hour to form giant vesicles. The liposome suspension was combined with a solution of fluorescein-labeled CtxB-488 for staining the cholesterol-rich raft-like domain. The fluorescent images of liposomes were acquired using a confocal fluorescent microscope (LSM 510 META confocal microscopy, Carl Zeiss, Jena, Germany).
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3

Quantifying Lipid Accumulation in Parasites

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Excess accumulation of lipid bodies within parasites was detected by using Nile Red dye55 (link). Briefly, promastigotes (1 × 107 cells/ml) were treated with β-sitosterolCCL (IC50 dose) at 24 h and 48 h. Cells were incubated with 10 μg/ml Nile Red for 30 min in the dark and then fixed with 4% paraformaldehyde in phosphate buffer (0.1 M, pH 7.2). Parasites were then imaged under LSM510-META confocal microscopy (Carl Zeiss, Germany)56 (link) at 480 nm for excitation and 530 nm for emission.
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4

Measuring Intracellular Calcium Dynamics

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Intracellular calcium assay was performed as previously described [30 (link)]. The culture medium of the Flp-In NCC HEK293 cells was replaced by loading buffer containing 5 μg/ml Fluo 4-AM (Dojindo, Kumamoto, Japan), 1.25 mmol/l probenecid (Dojindo, Kumamoto, Japan), and 0.02% Pluronic F-127 (Dojindo, Kumamoto, Japan). Following incubation with 5 mM EGTA or 1 μM SEA0400 in the loading buffer for 1h at 37°C, the loading buffer was replaced by recording medium containing 1.25 mmol/l probenecid. NCX1 siRNA silencing was applied 48 h before loading buffer replacement. Following the administration of KCl (final concentration: 10 mM), the fluorescence intensities of Fluo 4 were quantified from five regions of interest using LSM 510 Meta confocal microscopy and the Zen 2009 software (Carl Zeiss, Oberkochen, Germany).
http://dx.doi.org/10.17504/protocols.io.baihicb6
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5

Quantifying TIP47 in Glioma Tissues

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Glioma tissue microarray (TMA), containing over 109 clinical patient samples from the University of Kentucky, was used to analyze TIP47 by immunofluorescent staining (see details in Fig. 1, Table 1). Two separate areas from each patient sample were included in this TMA. After antigen retrieval, sections were incubated with TIP47 antibody followed by fluorescence labeled secondary antibody, and then photographed using a Zeiss LSM510 Meta confocal microscopy with 63× /1.4 NA oil objective. Five images in each core were captured, and 1 μm wide z-stacks acquired. TIP47 puncta were analyzed via ImageJ software (NIH) in a 3D stack, and showing as average of TIP47 puncta/nucleus. Institutional Research Board approval was obtained at UK prior to study initiation.
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6

Rice Root Tip Cell Division Visualization

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Nuclei of dividing cells in rice root tips were stained with EdU as described (Kotogany et al., 2010), with slight modifications. De‐hulled seeds were germinated in water for 3 days and transferred to fresh 0.5× Kimura solution (Yoshida and Institute, 1976) 2 days for a total of 5 days. On the fifth day, seedlings were incubated in 0.5× Kimura solution containing 2 µm of EdU for 2 h. Seminal root tips 1 cm in length were cut, fixed in 4% paraformaldehyde in PBS buffer (2.7 mm KCl, 1.47 mm KH2PO4, 137 mm NaCl and 8 mm Na2HPO4, pH7.4) containing 0.1% (v/v) Triton X‐100, incubated for 30 min and then washed three times in PBS (10 min each time). Nuclei in root tips were then stained with EdU conjugated with the Alexa 555 fluorescence dye following the manufacturer's instructions (Invitrogen, Boston, MA, USA). The EdU signal was captured by Z‐stack serial sections under Zeiss LSM510 Meta confocal microscopy. EdU signal volume was calculated with Imaris 8.1.2 software (BitPlane, Zurich, Switzerland) with the default parameter settings for Surface items.
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7

Intestinal Crypt Autophagy Quantification

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Mice were euthanized, and intestines were fixed (3.7% formaldehyde for 3 min) and promptly washed with PBS. The tissue was fixed in formalin for an additional 12–18 h. Fixed tissue was embedded in OCT and sectioned on a cryotome into 6 μm sections. Slides were washed with PBS and mounted with Prolong Gold Antifade reagent with DAPI (Invitrogen). Images of the sections were collected using LSM510 META confocal microscopy (Carl Zeiss). The z stack images were collected and the GFP signals were analyzed through the sections. Each individual crypt was analyzed in three dimension to reveal the number of LC3-GFP positive crypts using an Imaris 7 3D/4D an image processing and analysis software (Bitplane). Multiple crypts (5-7) were chosen from 3 different animals per group and the average mean LC3-GFP counts quantified per crypt using Imaris software 7 (Bitplane).
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8

Neutrophil Activation and Localization

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Human neutrophils were incubated on fibrinogen (1 mg/ml)-coated glass slides at 37 °C for 30 min, and then treated with DMSO or CYR5099 for 5 min before activating by PMA (10 nM) for an additional 5 min. Cells were fixed with 4% paraformaldehyde, washed three times with PBS, and permeabilized with 0.05% (w/v) Triton X-100. Afterwards, cells were soaked three times with 0.15 M glycine/PBS, and blocked with 5% goat serum for 1 h at 4 °C. Cells were incubated with anti-p47phox antibody (1:500) overnight at 4 °C, followed by incubation with secondary Oregon Green 488-conjugated anti-rabbit IgG antibody (1:1000) for 1 h. Cells were then washed with 0.15 M glycine/PBS and stained with Hoechst 33342 (1 ng/ml) and DiI (1 ng/ml) for 10 min at room temperature. Images were collected by Zeiss LSM 510 Meta confocal microscopy [24 (link)].
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9

Visualizing Sperm Storage in Flies

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To study the sperm storage and releasing ability, females of the interested genotype were mated with 2–3 days old dj-GFP males, which have GFP labeled sperm tails (BS#5417) [35] (link). At 6 hpm and 10 days post mating (dpm), the female reproductive tract was dissected, fixed in 4% PF and washed for 15 minutes in PBTx. Following this, the samples were stained with phalloidin-TRITC (Sigma) for visualizing seminal receptacle. The presence or absence of sperms was monitored by looking for GFP signal in the seminal receptacle. Imaging was performed using Zeiss LSM510 Meta confocal microscopy and the images were processed with LSM software (version 3.2.0.115, Zeiss).
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10

Intestinal Crypt Autophagy Quantification

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Mice were euthanized, and intestines were fixed (3.7% formaldehyde for 3 min) and promptly washed with PBS. The tissue was fixed in formalin for an additional 12–18 h. Fixed tissue was embedded in OCT and sectioned on a cryotome into 6 μm sections. Slides were washed with PBS and mounted with Prolong Gold Antifade reagent with DAPI (Invitrogen). Images of the sections were collected using LSM510 META confocal microscopy (Carl Zeiss). The z stack images were collected and the GFP signals were analyzed through the sections. Each individual crypt was analyzed in three dimension to reveal the number of LC3-GFP positive crypts using an Imaris 7 3D/4D an image processing and analysis software (Bitplane). Multiple crypts (5-7) were chosen from 3 different animals per group and the average mean LC3-GFP counts quantified per crypt using Imaris software 7 (Bitplane).
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