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25 protocols using anti ki67

1

Comprehensive Immunofluorescence Staining Protocol

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Cells were successively treated for 30 min with 4% (w/v) paraformaldehyde, 0.4% (v/v) Triton X-100 in PBS and dilute donkey serum (Jackson ImmunoResearch Labs), and then incubated with primary antibodies overnight at 4 °C and corresponding fluorescent secondary antibodies as well as Hoechst 33342 (Invitrogen) at room temperature for 1 h. The primary antibodies used were anti-RAP1 (Santa Cruz, sc53434), anti-OCT3/4 (Santa Cruz, sc5279), anti-SOX2 (Santa Cruz, sc17320), anti-NANOG (Abcam, ab21624), anti-TUJ1 (Sigma, T2220), anti-SMA (Sigma, A5228), anti-FOXA2 (CST, 8186), anti-Ki67 (Vector, VP-RM04), anti-PAX6 (Covance, PRB-278P), anti-Nestin (BD, 560422), anti-MAP2 (Sigma, M4403) and anti-Reelin (MBL, D223-3).
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2

Immunohistochemical Analyses of Intestinal Tissues

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Intestinal tissue was fixed, processed and haematoxylin and eosin stained as described previously [41 (link)]. The following antibodies were used for immunohistochemistry: anti-Cd4(1:100; eBioscience), anti-Cd8 (1:200; eBioscience) anti-Caspase 3 (1:750; R&D systems), anti-β-catenin (1/50; Becton Dickinson), anti-Ki67 (1:200; Vector Labs) and mouse anti-BrdU (1:100; Becton Dickinson). Staining for Treg cells was performed on a Ventana (Roche) Discovery Ultra Autostainer (Serial number 313108) using Antigen Retrieval CC1 buffer (Ventana) for 48 minutes at 95° C and an Anti-mouse/rat FoxP3 (1/25; eBioscience) in discovery antibody diluent (Roche).
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3

Immunohistochemical Analysis of Tissue Samples

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Formalin-fixed paraffin-embedded sections were deparaffinized and rehydrated by passage through xylene and a graded alcohol series. Endogenous peroxidase activity was inactivated by treatment with 3% hydrogen peroxide, after which antigen retrieval was performed by incubation in citrate buffer in a pressure cooker. Sections were blocked in 5% serum for an hour and then incubated with primary antibody overnight at 4°C. Primary antibodies used were anti-CD31 (Abcam) 1:100, anti-MPO (Dako) 1:1,000, anti-F4/80 (Abcam) 1:100, anti-tenascin (Sigma) 1:2,000, anti-Ki-67 (Vector) 1:200 and anti-cleaved caspase-3 (R&D) 1:800. Sections were incubated in secondary antibody for 30 min (Vectastain ABC system) and staining visualized with 3,3′-diaminobenzidine tetrahydrochloride. Sirius red staining was carried out as described previously.
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4

Immunohistochemical Analysis of Mouse Colon

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Mouse colons were fixed in formalin and paraffin-embedded. For Ki67, β-catenin, and PepT1 staining, sections were deparaffinized. Sections were incubated in sodium citrate buffer (pH 6.0) and cooked in a pressure cooker for 10 minutes for antigen retrieval. Sections were then blocked with 5% goat serum in TBS followed by one hour incubation with anti-Ki67 (1:100, Vector Laboratories, Burlingame, CA), anti-β-catenin (1:1000, Cell Signaling, Danvers, MA) or anti-mPepT1 at 37° C. After washing with TBS, sections were treated with appropriate biotinylated secondary antibodies for 30 minutes at 37°C, and color development was performed using the Vectastain ABC kit (Vector Laboratories). Sections were then counterstained with hematoxylin, dehydrated, and coverslipped. Images were acquired using an Olympus microscope equipped with DP-23 Digital camera. Ki67-positive cells were counted per crypt.
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5

Quantifying Tumor Cell Cycle Progression

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The U251 glioma were harvested, fixed in formalin, and serial sections were stained with anti-Ki67 (Vector Laboratories) and anti-geminin (Santa-Cruz) in the Research Pathology Shared Resource. For each tumor, at least 2 fields from each of 2 sections were photographed, each field representing about 1000 cells; 2–4 individual tumors were scored at each time point. The number of cells positive for geminin was expressed as a percentage of those positive for Ki67. Geminin is an established marker of S/G2 cells and readily amenable to analysis of cell cycle distribution in solid tumors, particularly as normal tissues are rarely proliferative. We have previously demonstrated that the use of geminin is best when combined with the Ki67 index which thereby corrects for differential proliferative index in different regions of a tumor 22 (link).
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6

Comprehensive Antibody Panel for Cell Characterization

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Primary antibodies for FACS were anti-CD73-PE (550741, 1:100), anti-CD90-FITC (555595, 1:200) from Biosciences and anti-CD105-APC (17-1057, 1:100) from eBioscience. Primary antibodies for Western blot were anti-WRN (sc-5629, 1:500), anti-β-Actin (sc-130301, 1:3,000), anti-β-Tubulin (sc-5274, 1:3,000) from Santa Cruz Biotechnology, anti-P21 (2947, 1:2,000), anti-HP1γ (2619, 1:1,000) from Cell Signaling Technology, anti-LAP2β (611000, 1:2,000) and anti-P16 (4828, 1:200) from BD Bioscience. Antibodies for immunofluorescent staining were anti-hSMA (ZM-0003) from ZSGB-Bio, anti-Progerin (sc-81611, 1:50), anti-Lamin A/C (sc-7293, 1:200) from Santa Cruz Biotechnology, anti-HP1γ (2619, 1:500) from Cell Signaling Technology, anti-53BP1 (A300-273A, 1:500) from Bethyl Laboratories, anti-γ-H2AX (05-636, 1:500) from Millipore, anti-LAP2β (611000, 1:500), anti-hCD31 (555445, 1:200) from BD Bioscience, and anti-Ki67 (VP-RM04, 1:1,000) from Vector.
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7

Immunohistochemical Analysis of Tissue Samples

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Five-micrometer sections were deparaffinized, rehydrated, and treated in a pressure cooker with citrate buffer for antigen retrieval. Sections were incubated in primary antibodies (diluted 1:500 in blocking solution) overnight at 4°C. We used the following rabbit polyclonal antibodies: anti-GFP (Cell Signaling Technology, 2956), anti-phospho-ERK (Cell Signaling Technology, 4370), anti-β-catenin (Cell Signaling Technology, 9587), anti-cleaved Caspase 3 (Cell Signaling Technology, 9661), anti-cytokeratin 20 (Progen, GP-K20), anti-LYVE-1 (RELIATech, 103-PA50AG), anti-P53 (Vector Laboratories, CM5), anti-Ki67 (Vector Laboratories, VP-RM04), anti-TGFb1 (Proteintech, 18978-1-AP), and p-Smad2 (ThermoFisher, 44-244G). An anti-rabbit IgG HRP-linked secondary antibody (DAKO's Envision dual-link system, K4063) was used to visualize binding of primary antibody. Sections were developed with the DAB chromogen (Vector Laboratories), counterstained with Mayer's hematoxylin, dehydrated, and coverslipped with Permount.
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8

Immunohistochemical Evaluation of Tumor Response

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For histological evaluation of treatment effect, tumors from CM, RM experimental, and PBS control groups were processed for paraffin embedding and sectioned at 7 µm. Immunostaining was performed using paraffin sections essentially as described with n = 3 mice per group49 (link). Following antigen unmasking in citrate solution (113.93 mM Na3C6H5O7, pH 6), incubation with combined primary antibodies including polyclonal anti-Ki67 (at 1:200, Abcam, Cambridge, UK) and monoclonal anti-vimentin (at 1:400, Sigma-Aldrich, St Louis, Mo.) was performed overnight at 4 °C. This was followed by amplification of signals from anti-Ki67 with biotinylated anti-rabbit Ig (Vector Laboratories). Detection was performed with streptavidin-Alexa 488 and anti-mouse Ig-Alexa 594 (Thermo Fisher Scientific, Waltham, MA). Nuclei were stained with 0.001% 4′, 6 diamidino-2-phenylindole (DAPI). Images were captured on confocal microscope Zeiss LSM510 under 40X/1.3 oil DIC M27 objective and images processed with the Zen software (Zeiss, Welwyn Garden City, and UK) and ImageJ application was used to analyze and generate images.
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9

Transforming Growth Factor-β1 Regulation

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TGF-β1 was purchased from R&D Systems (Minneapolis, MN). Human has-miR-20a mimics and control miRNA mimics were from Thermo Scientific Dharmacon (Lafayette, CO). Antibodies were purchased as follows: anti-Smad2, anti-Smad3, anti-phospho-Smad2 and anti-phospho-Smad3 from Cell Signaling (Denver, MA); anti-p21CIP1, anti-Smad4, anti-c-Myc and anti-TβRII from Santa Cruz Biotechnology (Santa Cruz, CA); anti-Ki67 from VECTOR (Burlingame, CA); and anti-β-actin from Sigma Biochemicals (St Louis, MO). The TRKI (LY2109761) was kindly provided by Dr. Jonathan Yingling (Eli Lilly Pharmaceuticals, Indianapolis, IN).
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10

Immunohistochemical Analysis of Tumor Biomarkers

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Mice were killed by carbon dioxide asphyxiation. Staining was performed in formalin-fixed, paraffin-embedded tumour sections (4-μm thickness). Fully automated immunostaining was achieved using a BenchMark XT autostainer (Ventana Medical Systems Inc., Tucson, AZ, USA). The following antibodies were used: monoclonal mouse anti-human CEACAM6 (9A6, 1:4,000; Santa Cruz Biotechnology Inc.), anti-CC3 (1:100, BioCare Medical, Pacheco, CA, USA), and anti-Ki-67 (1:100, VP-K452; Vector Laboratory, Burlington, Canada). The number of positive cells per tumour area was quantified.
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