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4 protocols using gata3 clone twaj

1

Comprehensive Immune Cell Phenotyping

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The following antibodies from BD, eBioscience and BioLegend were used from cell surface antigen staining: CD8α (clone 53-6.7; eBioscience and BD), CD5 (clone 53-7.3; eBioscience), CD25 (clone 7D4; BD), CD44 (clone IM7; eBioscience), CD69 (clone H1.2F3; BioLegend and eBioscience), CD62L (clone MEL-14; eBioscience and BD), CD98 (clone RL388; BioLegend), CD122 (clone 5H4; eBioscience), Vα2 (clone B20.1; eBioscience), CD107a (clone 1D4B; BD), and TCRβ (clone H57-597; BD).
For intracellular staining, the following antibodies from eBioscience were used: TNF (clone MP6-XT22), IFNγ (clone XMG1.2), and Themis (clone 1TYMS).
For nuclear staining, the following antibodies were used: Foxp3 (clone MF-14; BioLegend), GATA3 (clone TWAJ, eBioscience), and Eomes (clone Dan11mag; eBioscience).
For metabolic marker analysis, the following primary antibodies from Cell Signaling were used: c-Myc (clone D3N8F), pAkt T308 (clone D25E6), and p-S6 ribosomal protein S235/236 (clone D57.2.2E). Goat anti-rabbit F(ab’)2 fragment Alexa Fluor 488 (Invitrogen) was used as secondary antibody.
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2

Multiparameter Flow Cytometric Analysis of Immune Cell Subsets

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Single-cell suspensions obtained from spleen, sdLNs, and skin were analyzed by flow cytometry using fluorochrome-conjugated mAbs listed in Table S1. Zombie Aqua or Zombie NIR (Biolegend) was used to distinguish live and dead cells. Intracellular staining was carried out on cells incubated with Brefeldin A (Biolegend) in all tissue digestion and FACS staining buffers, approximately for 4 hours. Cells were permeabilized and fixed with transcription factor staining buffer (Invitrogen) or Cytofix/Cytoperm (BD Biosciences) and subsequently incubated with fluorochrome-conjugated mAb to mouse IFN-γ (clone XMG1.2, eBioscience), IL4 (clone 11B11, Biolegend), Tbet (clone 4B10, Biolegend), or GATA3 (clone TWAJ, eBioscience). Flow cytometric analysis was carried out using a Cytek Aurora, and analysis was conducted with FlowJo software 9.7.6 (TreeStar).
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3

Identification of Thymic ILC Populations

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Cell surface staining was performed at 4°C for 30 min in FACS buffer (10% FBS, 2.5mM EDTA in PBS). ILC were identified among CD8α (clone 5.3–6.7, Biolegend), CD3i (clone 17A2, Biolegend), IL‐7Rα+ (clone A7R34, Biolegend), B220 (clone RA3‐6B2, eBioscience), CD11b (clone M1/70, eBioscience), CD11c (clone N418, eBioscience), CD3 (clone 145‐2C11, eBioscience), and CD5 (clone 53–7.3, eBioscience). Thymic iNKT cells were identified as mCD1d/PBS57+ and TCRβ+ (clone H57‐597, eBioscience). Intracellular cell staining was performed at room temperature for 1 h in permeabilization buffer (eBioscience). ILC2 and ILC3 subsets were identified using Abs against GATA3+ (clone TWAJ, eBioscience) and RORγt+ (clone AFKJS‐9, eBioscience). Staining for RANKL expression was performed in two steps using biotinylated RANKL (clone: IK22/5, eBioscience) and streptavidin‐PECy7 (Molecular Probes) at 4°C for 30 min in FACS buffer. Samples included Spherotech Accucount blank particles to enable calculation of cell frequency and were acquired using a Fortessa (BD). Samples were analyzed using FlowJo (FlowJo, LLC). Full gating strategy for all flow cytometry data identifying thymic ILC populations is shown in Supporting Information Fig. 1A.
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4

Intracellular Cytokine Profiling by Flow Cytometry

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For analysis of intracellular cytokine production cells were re-stimulated for 4 hours at 37°C in RPMI media supplemented with 10% FCS, 2 mM L-glut, 100 U/ml P/S with 0.1 μg/ml Phorbol 12-myristate 13-acetate (PMA), 1 μg/ml Ionomycin and 10 μg/ml Brefeldin A. Cells were surface stained with mAbs diluted in PBS/0.1% BSA and Fc-block (Biolegend) for 30 min on ice. Fixable Viability Dye (eBioscience) was added to allow the exclusion of Additionally, biotinylated antibodies were used for the staining ST2 (IL-33R) (Mdb, clone DJ8) and TSLPR (Biolegend, 22H9). For intracellular staining, cells were fixed and permeabilized using the Foxp3/transcription factor staining kit (eBioscience), and incubated with the following fluorochrome-conjugated mAb: GATA3 (clone TWAJ), Foxp3 (clone FJK-16s), IL-5 (clone TRFK5), IFNg (XMG1.2), TGFB1-LAP (clone TW7-16B4), Ki67 (clone SolA15). Areg was detected with a biotinylated mAb (R&D Systems, BAF989). To identify ILC, a cocktail of biotinylated mAb against the following surface markers was used to allow gating on linage negative cells: NK1.1, CD19, CD5, F4/80, CD11c, Ter119, Cd3e, CD11b, LysG1, TCRgd. Binding of biotinylated antibodies was detected using fluorochromeconjugated streptavidin (Biolegend). Flow cytometry analyses were performed on a Fortessa flow cytometer (BD) and data were analyzed with FlowJo 9.9.4 software (BD).
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