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5 protocols using m3696

1

Immunostaining Assay for Neurite Outgrowth

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To explore the neurite outgrowth, the immunostaining was performed as follows. Cultured neurons were fixed with 4% paraformaldehyde (Sigma-Aldrich) for 20 min at 4 °C and wash three times with PBS for 5 min each. To permeate the cell membrane, 1% Triton X-100 (Sigma-Aldrich) was used for 5 min at room temperature, followed by PBS washing. For blocking nonspecific binding, the sample was treated with 6% bovine serum albumin (BSA; Sigma-Aldrich) for 30 min. After washing with PBS, it was reacted with primary antibodies diluted in 1.5% BSA solution for 2 h at 37 °C. The following primary antibodies were used: anti-MAP2 (1:500, M3696, Sigma-Aldrich), anti-tau-1 (1:500, MAB3420, Merck Millipore, MA, USA), anti-beta-III-tubulin (1:500, T2200, Sigma-Aldrich). Secondary antibodies (Alexa Fluor 488 and 594, 1:500, A11001, A11008, A11012 and A11032, Invitrogen; Thermo Fisher Scientific) diluted in 1.5% BSA were loaded for 30 min at 37 °C. To characterize damage of a biomolecule on the NIR-illuminated surface, anti-laminin (1:500, L9393, Sigma-Aldrich) was used with the same procedure except that there is no cell fixation and permeabilization step. An inverted microscope (IX71; Olympus) with a digital camera (DP71; Olympus) was used to take fluorescence and phase-contrast images.
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2

Immunofluorescence Analysis of Motor Neurons

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Motor neurons were cultured on glass coverslips for 12 days. Then, cells were rinsed twice in cold 0.01 M PBS (pH 7.4) and fixed in 4% (w/v) paraformaldehyde (Sigma-Aldrich, Milan, Italy) for 20 min at RT. After three washes in PBS, cells were blocked with 3% (w/v) BSA and 0.05% Triton-X (Bio-Rad, Milan, Italy) for 1 h at RT. Coverslips were then incubated overnight at 4 °C with the following primary antibodies: rabbit polyclonal antibody against NCX1 (#π11-13, Swant, Bellinzona, Switzerland), rabbit polyclonal antibody against NCX3 (Dr. K. Philipson Laboratory, University of California, Los Angeles, CA, USA), mouse monoclonal antibody against SOD (#S2147, Sigma-Aldrich, Milan, Italy), mouse monoclonal antibody against p-Akt (#4051, Cell Signaling Technology Inc., Danvers, MA, USA), or rabbit polyclonal antibody against MAP2 (#M3696, Sigma-Aldrich, Milan, Italy). After three washes in PBS, coverslips were incubated in the dark with the corresponding secondary antibodies for 1 h at RT. Dapi was used to stain nuclei. Images were acquired by using a Zeiss LSM 700 laser (Carl Zeiss) scanning confocal microscope.
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3

Immunocytochemical Staining of Neuronal Subtypes

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Human iNs were fixed for 15 minutes in 4% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA) in PBS at room temperature. Cells were premeabilized in 0.2% Triton X-100 in PBS for 10 minutes and then incubated in blocking buffer (1× PBS, 20% Goat serum) for 1 hour 30 minutes. Cells were then incubated overnight with primary antibodies. The primary antibodies used were: anti-MAP2 (Sigma, M3696, 1:750; Sigma, M1406 1:1,000 and 1:500), anti-vGlut2 (NeuroMab clone N29/29, 1:1,000), anti-tyrosine hydroxylase (TH, Millipore AB152, 1:500), anti-GAD6 (Sigma, G5038, 1:1,000), anti-β-III-tubulin (Tuj1, Covance, 1:500), anti-synapsin (rabbit anti-synapsin, E028, a gif from the Südhof lab, 1:3,000) and Hoechst (1×). Excitatory (glutamatergic) neurons were stained for MAP2, vGlut2 and β-III-Tubulin. Dopaminergic neurons were stained for MAP2 and TH. Inhibitory (GABAergic) neurons were stained for GAD6. Confocal images were collected using a Zeiss LSM700 laser scanning microscope (Carl Zeiss, Dublin, CA). Three-way circuit images were acquired by taking Z-stacks and processing the stacks as maximum intensity projections.
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4

Immunofluorescent Analysis of Inhibitory Neurons

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Inhibitory human neurons were fixed for 15 minutes in 4% paraformaldehyde in phosphate buffered saline (PBS) and permeabilized using 0.1% Triton X-100 in PBS for 10 minutes at room temperature. Cells were then incubated in blocking buffer (4% bovine serum albumin (BSA) with 1% normal goat serum in PBS) for 1 hour at room temperature and then incubated with primary antibodies diluted in blocking buffer for 1 hour at room temperature, washed with PBS three times, and subsequently incubated in secondary antibodies for 1 hour at room temperature. Confocal imaging analysis was performed using a Zeiss LSM700. Primary Antibodies used include: mouse anti Oct4 (Millipore Sigma MAB4401, 1:2000), mouse anti Tra-1-60 (Millipore Sigma MAB4360, 1:1000), mouse anti MAP2 (Sigma-Aldrich M1406, 1:500), rabbit anti MAP2 (Sigma-Aldrich M3696, 1:500), chicken anti MAP2 (Millipore AB5543, 1:1000), rabbit anti Synapsin (e028, 1:3000), rabbit anti VGAT (Millipore Sigma AB5062P, 1:2000), mouse anti Gad-67 (Abcam ab26116, 1:500), mouse anti β3 Tubulin (BioLegend 801201, 1:2000), mouse anti Calbindin (Abcam ab82812, 1:500), guinea pig anti Parvalbumin (Swant GP72, 1:2500), rat anti Somatostatin (Millipore MAB354, 1:50).
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5

Immunofluorescent Analysis of Inhibitory Neurons

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Inhibitory human neurons were fixed for 15 minutes in 4% paraformaldehyde in phosphate buffered saline (PBS) and permeabilized using 0.1% Triton X-100 in PBS for 10 minutes at room temperature. Cells were then incubated in blocking buffer (4% bovine serum albumin (BSA) with 1% normal goat serum in PBS) for 1 hour at room temperature and then incubated with primary antibodies diluted in blocking buffer for 1 hour at room temperature, washed with PBS three times, and subsequently incubated in secondary antibodies for 1 hour at room temperature. Confocal imaging analysis was performed using a Zeiss LSM700. Primary Antibodies used include: mouse anti Oct4 (Millipore Sigma MAB4401, 1:2000), mouse anti Tra-1-60 (Millipore Sigma MAB4360, 1:1000), mouse anti MAP2 (Sigma-Aldrich M1406, 1:500), rabbit anti MAP2 (Sigma-Aldrich M3696, 1:500), chicken anti MAP2 (Millipore AB5543, 1:1000), rabbit anti Synapsin (e028, 1:3000), rabbit anti VGAT (Millipore Sigma AB5062P, 1:2000), mouse anti Gad-67 (Abcam ab26116, 1:500), mouse anti β3 Tubulin (BioLegend 801201, 1:2000), mouse anti Calbindin (Abcam ab82812, 1:500), guinea pig anti Parvalbumin (Swant GP72, 1:2500), rat anti Somatostatin (Millipore MAB354, 1:50).
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