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48 protocols using tlrl 3pelps

1

CRISPR/Cas9-mediated MyD88 KO

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The CRISPR/Cas9 system was utilized to knock out MyD88, as described previously (7 (link)). Single-cell clones were screened with or without ultrapure Escherichia coli LPS 0111:B4 (Cat. tlrl-3pelps, InvivoGen) (100 ng/ml LPS) treatment for mScarlet-I expression on a Cytoflex S flow cytometer. A Western blot was run for all handicapped cell lines to determine the level of MyD88 protein, using anti-MyD88 antibody (D80F5, Cell Signaling Technology).
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2

Lipopolysaccharide (LPS) Preparation

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The lipopolysaccharide (LPS) preparation was from Escherichia coli O111:B4 (Invivogen tlrl-3pelps, 5E + 06EU/ml). Buffer substances were from standard laboratory suppliers, including Carl Roth (Karlsruhe, Germany) and Sigma (Taufkirchen, Germany). The suppliers of specific reagents are indicated in the respective methods section.
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3

Murine Model of Acute Lung Injury

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We employed an endotoxemic murine model of ALI induced by systemic intraperitoneal LPS as previously described [3 (link)]. Briefly, mice were fed tamoxifen 20 mg/ml in corn oil) for five consecutive days to induce endothelial cell-specific deletion of Irf1 before being left untreated for 4 weeks. Thereafter, mice were challenged with phosphate-buffered saline (PBS) vehicle control or a sublethal dose of LPS (8 mg/kg i.p., Ultrapure LPS from E. coli 0111:B4; cat. no. tlrl-3pelps, Invivogen) and then killed at various endpoints before tissue harvesting. Mice were anesthetized with pentobarbital sodium (50 mg/kg) and were decapitated.
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4

Ex vivo Generation of Osteoclast Precursors

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Osteoclast precursors were generated ex vivo as described previously [18 (link), 26 ]. Briefly, after flushing and harvesting bone marrow, cells were seeded into tissue culture plates and allowed to grow overnight. Subsequently, non-adherent cells were transferred to non-treated suspension plates with 35 ng/mL MCSF (Biolegend, 574804) and allowed to grow up to 70–80% confluence. Cells were later harvested using Accutase cell disassociation reagent (MilliporeSigma, A6964) and seeded at a density of 26,000 cells per cm2 in 10% α-MEM media (MilliporeSigma, M0894) supplemented with 35 ng/mL MCSF and 100 ng/mL RANKL (Shenandoah Biotechnology, 200-04-100μg). After, a period of 4 days, multinuclear cells were visible as a result of osteoclastogeneis and TRAP stained following the guidelines mentioned in the Leucocyte acid phosphatase or TRAP kit (Sigma Aldrich, 387-A). In case of LPS (ultrapure, Invivogen, tlrl-3pelps) treated groups, cells were treated with MCSF + RANKL + LPS or initially stimulated with MCSF + RANKL for a period of 48 hr and later treated with MCSF and LPS (100 ng/mL) for another 72 hr before TRAP staining or other functional assessments as described previously [16 (link)].
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5

Murine Airway Inflammation and Immune Response

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LPS (InvivoGen; tlrl-3pelps), alum (InvivoGen; tlrl-alk), recombinant murine IL-5 (PEPROTECH; 210-13), recombinant murine IL-1β (R&D Systems; 401-ML), SecinH3 (Abcam; ab145048), Brefeldin A (Wako; 022-15991), Cytochalasin B (Wako; 14930-96-2), OVA (MilliporeSigma; A2512-1G), HDM (Dermatophagoides pteronyssinus; LSL; LG-5449), and aluminium hydroxide gel (Wako; 012-24241) were purchased. Cytokines were measured by ELISA with mouse IL-1β (R&D Systems; MLB00C), mouse IL-5 (R&D Systems; M5000), mouse IL-13 (R&D Systems; M1300CB), mouse OVA-specific IgG1 antibody (Cayman Chemical; 500830), and mouse OVA-specific IgE antibody (BioLegend; 439807) kits according to the manufacturer’s protocols. Mouse monoclonal antibodies against β-actin (MilliporeSigma; A5441), caspase-1 (R&D Systems; MAB6215), IL-1β (Cell Signaling Technology; 3A6), and a rabbit polyclonal antibody against ASC (AdipoGen; AG-25B-0006) were purchased. Primary airway macrophages were isolated from BALF and were grown in RPMI 1640 with 10% FBS, 65 μg/ml penicillin, 100 μg/ml streptomycin, and 0.25 μg/ml fungizone.
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6

Measuring NLRP3 Inflammasome Activation

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Stefin B expressing and control iMACs were harvested and plated at 0.8x104 (link) cells/well in a 96 well plate and left to adhere for 3 hours. To assess LDH release after activation of the NLRP3 inflammasome, cells were washed once and primed with 200 ng/ml Ultra-pure LPS (Invivogen; tlrl-3pelps) for 3 hours in DMEM containing 1% heat inactivated FCS. 10 μM nigericin (Invitrogen; N1495) was then added and the cells incubated for a further 1.5 h. To assess LDH release following Leu-Leu-o-Methyl ester (LLoMe - Santa Cruz; 16889-14-8) cells were washed once and treated with 1mM LLoMe for 2 hours in DMEM containing 1% heat inactivated FCS. For both assays the 96 well plate was centrifuged at 400 xg for 5 minutes and supernatants were then harvested and LDH release was measured from the supernatant using the LDH cytotoxicity kit (Pierce; 10008882).
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7

Inhibition of DPP8/9 and Inflammasome Activation

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The small molecule inhibitor of DPP8/9, Talabostat mesylate (Val-boroPro mesylate), was purchased from MedChem Express (HY-13233A). LPS (InvivoGen tlrl-3pelps) was used at 1,000 EU/ml made in EGMV2 media. Nigericin was purchased from MedChem Express (HY-100381).
For cell-culture experiments, Talabostat was prepared in DMSO solution containing 0.1% TFA to prevent cyclization. TFA was purchased from Sigma-Aldrich (T6508-5Ml). Triton-X 100 was purchased from Merck (T8787-250 ml). The inhibitors Bortezomib (HY-10227), Rupintrivir (HY-106161), SNAP (82250-25), and Z-VAD-FMK (HY-16658B) were purchased from Cayman Chemical. Specific inhibitor Disulfuram (#PHR1690; Sigma-Aldrich) was purchased from Sigma, and Belcanasan (HY-13205) was purchased from MedChem Express.
Antibodies used were anti-NLRP1 (Cat.no AG-25B-0005-C100; Adipogen), anti-C-terminal–CARD8 (ab24186; Abcam), anti-N-terminal–CARD8 (ab194585; Abcam), anti-ASC (AG-25B-0006-C100; Adipogen), anti-pro-caspase-1+ p10 +p12 (ab719515; Abcam), anti-N-terminal–Gasdermin-D (ab215203; Abcam), cleaved GSDMD-NT (Asp275; 36425; Cell Signaling Technology), GSDMDC1 (NBP2-33422; Novus Biologicals), anti-eIF4G(C45A4) (2469; Cell Signaling Technology), anti-PABP (10910-1-AP; Proteintech), anti–IL-18 (ab201324; Abcam), anti–IL-1β (AB201; R&D systems), and anti–β-actin (A2228-100 µl; Sigma-Aldrich).
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8

Microglia Activation by Amyloid-beta and Alpha-Synuclein

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hiPSC cultures and microglial differentiation methods were as previously described (54 (link)). Fully differentiated microglial cells were placed into phenol-free Iscove’s modified Dulbecco’s medium (IMDM; Thermo Fisher Scientific, 21056023); 1 day later, cells were pretreated with 5 nM β-estradiol (Sigma-Aldrich, E8875) or control diluent for 4 hours and then exposed to 750 nM oligomerized Aβ (Anaspec, AS-20276), 150 nM oligomerized α-synuclein (Anaspec, AS-20276), and LPS (10 ng/ml; Invivogen, tlrl-3pelps) were incubated in the presence or absence of β-estradiol as previously described (55 (link), 92 (link), 93 (link)). For transient transfection of HEK293T cells (System Biosciences, LV900A-1) with plasmids encoding either WT C3 or mutant C3(C720A), Lipofectamine 2000 was used according to the manufacturer’s instructions (Thermo Fisher Scientific, 11668019).
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9

Macrophage Metabolism and Inflammation

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PMφs, BMDMφs or RAW264.7 Mφs were cultured for 24 h with human medium oxidized low-density lipoprotein (100 μg/mL, Kalen Biomedical Cat#770202) or cholesterol (50 μg/mL, Sigma Cat#C3045), followed by ultrapure LPS stimulation (10 ng/mL, InvivoGen, Cat#tlrl-3pelps) for up to 8 h. Ethanol (0.5%) was used as a carrier control for cholesterol (-Chol). For inhibitor experiments, 2-DG (25 mM) (Sigma, D8375), Acriflavine (2.5 µM) (Sigma, Cat#01673) and TEPP-46 (100-900 µM) (Tocris, Cat#7809) were added 1 h prior to LPS stimulation.
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10

Macrophage Response to oxLDL and Cholesterol

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BMDMφs and PMφs were cultured for 24 h with human medium oxLDL (100 μg/ml, Kalen Biomedical, no. 770202) or cholesterol (50 μg/ml, Sigma-Aldrich, no. C3045), followed by ultrapure LPS stimulation (10 ng/ml, InvivoGen, no. tlrl-3pelps) for up to 6 h, or CpG (300 nM) (InvivoGen, no. tlrl-1826), Pam3CSK4 (10 ng/ml) (Tocris Bioscience, no. 4633), or bpV (HOpic) (10 µM) (Sigma-Aldrich, no. SML0884) stimulation for up to 3 h. Ethanol (0.5%) was used as a carrier control for cholesterol. For inhibitor experiments, MK-2206 (3 µM) (Cayman Chemical, no. 11593), AKT2i (3 µM) (Sigma-Aldrich, no. 124029), Mito-TEMPO hydrate (25 µM) (Cayman Chemical, no. 16621), and bpV (HOpic) (10 µM) were added 1 h prior to LPS stimulation. For assessing the accumulation of oxLDL, a mixture of DiI-oxLDL and oxLDL (10 and 90 μg/ml, respectively) were added to PMφs for 24 h. In all experiments, Mφs were first cultured for 24 h with or without oxLDL or cholesterol. The groups without oxLDL or cholesterol served as controls. The control group for cholesterol loading was cultured with media containing the same concentration of ethanol as the cholesterol group. Cells were then stimulated with LPS from 0 up to 3 h. At each time point, the groups with versus without oxLDL or cholesterol were compared and changes over time were determined.
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