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9 protocols using cd16 32 antibody

1

Flow Cytometric Analysis of Immune Cell Markers

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Staining of surface markers was performed for 30 minutes at 4°C in cold PBS containing 1% bovine serum albumin (BSA, Sigma-Aldrich) and 0.02% sodium azide (FACS buffer; Sigma-Aldrich). The respective fluorescently labeled antibodies are listed in Supplementary Tables 1 and 2 (Supplementary Material). To avoid non‐specific antibody binding, Fc receptors were first blocked by incubating all samples with CD16/32 antibody (BD Biosciences). For intracellular staining, cells were subsequently fixed and permeabilized using Cytofix/Cytoperm™ kit (BD Biosciences). Therefore, cells were washed using Perm/Wash buffer, resuspended in Fixation/Permeabilization solution for 20 minutes at 4°C. Next, samples were washed twice using the Perm/Wash buffer prior to staining with the anti-arginase-1-PE antibody (R&D systems, Abingdon, United Kingdom), diluted in Perm/Wash buffer for 30 minutes at 4°C. The stained cells were evaluated on an LSRFortessa flow cytometer (Beckton Dickinson) while analysis was performed with the FlowJo 10.5.3 software (Tree Star Inc., Ashland, OR, USA).
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2

Dehydrocostus Lactone Modulates Inflammatory Pathways

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Dehydrocostus lactone (C15H18O2; MW: 230.30; purity ≥ 99%) (Figure 1A) and Compound C (Compd C) were purchased from Target Molecule Corp. (Target Mol, Shanghai, China). A stock solution of DHL (for in vitro study) was prepared at a concentration of 10 mmol/L in dimethyl sulfoxide (DMSO) (Sigma, St Louis, MO, USA) and stored at −20 °C. Lipoteichoic acid (LTA) from Staphylococcus aureus (L2515) was obtained from Sigma-Aldrich (St. Louis, MO, USA). Primary antibodies against p-p65, p65, p-p38 MAPK, p38 MAPK, p-AMPK(Thr172), AMPK, Nrf2, IκBα, and GAPDH were purchased from Cell Signaling Technology (Danvers, MA, USA). HO-1, iNOS, and CD163 were acquired from Abcam (Cambridge, MA, USA). β-actin and Lamin B were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). CD16/32 antibody and FITC-conjugated anti-Ly-6G antibody were purchased from BD Biosciences (San Jose, CA, USA).
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3

Isolation of Liver Non-Parenchymal Cells

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Liver was excised and non-parenchymal cells were isolated as previously described (42 (link)). Cells were pre-incubated with Fc-blocking antibody (CD16/32 antibody, BD, Heidelberg, Germany) and stained with antibodies against CD45 (clone 30-F11, eBioscience), CD41 (clone MWReg30, eBioscience), Ly6G (clone 1A8, BD Pharmigen), and CD11b (clone M1/70, BD Pharmigen). Hoechst 33258 (Life Technologies) was used to distinguish live from dead cells.
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4

Immune Cell Isolation and Sorting

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Antibodies used in this study for FACS analysis and sorting are listed in Supplementary Table 1. Red blood cells were lysed with ammonium chloride. CD16/32 antibody (BD Biosciences) was used to block the non-specific binding to Fc receptors before all stainings. Dead cells were excluded using DAPI (Invitrogen). For Tconv and Treg isolation from Foxp3EGFP reporter mice, CD45+TCRβ+CD4+ T cells, respectively GFP and GFP+, were FACS-sorted (BD FACS ARIATM IIu). Nrp1 staining was added to verify that the proportion of Nrp1−/low “adaptive” pTregs was substantially increased in the intestines compared to the spleen. For ILC3 isolation, CD45+/low lineage-negative (CD11bCD11cCD19TCRαβTCRγδ) RFP+NK1.1 cells were FACS-sorted from the intestines of RORγt-fate map mice (Rorc(γt)-CreTG × Rosa26-tdRFP). Lineage-negative NK1.1+ ILC1s were FACS-sorted from spleen or intestines. CD11b+CD11c+ myeloid cells were FACS-sorted from the spleen. TCRγδ+ and TCRβ+CD4+ T cells were FACS-sorted from inguinal lymph nodes of mice developing psoriasis-like dermatitis. All populations were isolated (>105 cells per mouse) to a purity of >98%.
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5

Microglial Phenotype Characterization in Brain Slices

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The brain slices were prepared as previously published [17 (link)]. After being blocked with 5% goat serum (TBST), the brain slices were incubated with CD16/32 antibody (1:500, BD Pharmingen, San Jose, CA, USA), CD206 (1:500, Abcam, Cambridge, UK), and Iba-1 (1:500, Wako, Richmond, VA) overnight at 4°C to 8°C. The sections were then treated with a fluroscencesecondary antibodies (1: 500, Invitrogen), and images were taken using a fluorescencemicroscope (Olympus PX51, Olympus Corporation, Shinjuku-ku, Japan) and analyzed with Adobe Photoshop 5.5 software. The cell number calculation was determined by counting of three randomly selected microscopic fields across three slides in the penumbra of ipsilateral cortex. Data are expressed as mean ± SD number of the percentage of CD16/32+ or CD206+ cells to the Iba-1+ cells.
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6

CyTOF analysis of tumor immune cells

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Immune cells were detected via CyTOF according to the manufacturer's manual. In brief, cells in a single cell suspension from tumour tissues were counted, and 3 × 106 were first incubated with cisplatin (Fluidigm Sciences). For staining, cells were blocked with 50 µl CD16/32 antibody (BD Biosciences) for 15 minutes at room temperature, and then, 50 µl CyFACS buffer containing a surface antibody cocktail was added directly to the blocking solution and incubated with cells for 30 minutes at room temperature. The metal-labelled antibodies are listed in Table S1. Next, the cells were successively fixed with 1.6% paraformaldehyde (Fluidigm Sciences) and incubated with intercalator-Ir (Fluidigm Sciences). After incubation overnight at 4 ℃, the cells were washed twice and resuspended in 1 × EQ Four Element Calibration Beads (Fluidigm Sciences). Finally, 300,000 events were collected on a CyTOF mass cytometer (Fluidigm Sciences). The data were analysed on the Cytobank website after normalization.
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7

Obesity-induced Liver Inflammation Model

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4-week-old male Kunming mice were purchased from the Experimental Animal Center of Fourth Military Medical University and approved by the Animal Ethics Committee of Fourth Military Medical University (License number: IACUC-2020065). The animal experiment was complied with the ARRIVE guidelines and was performed in accordance with the National Institutes of Health guide for the care and use of Laboratory animals. 60% high-fat diet were purchased from Readydietech, China. Streptozocin (STZ) was purchased from Sigma, USA. Hematoxylin-Eosin (HE) was purchased from Solarbio, China. CD31 antibody was purchased from Abcam (28364, 1:100), USA. F4/80 antibody was purchased from Abcam (6640, 1:100), USA. CD16/32 antibody was purchased from BD Biosciences (553142, 1:50), USA. Fluorescence secondary antibody was purchased from Invitrogen, USA. IL-1β and TNF-α ELISA kits were purchased from Proteintech, USA.
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8

Transfection-Induced Neuronal Differentiation

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Cells were collected after each transfection and maintained in NIM. Flow cytometry was done for neuronal marker expression by as described earlier (Patel et al., 2018) . Briefly, cells were collected in ice cold PBS and washed in FACS buffer and fixed in 2% paraformaldehyde. For MAP2 and NSE staining, cells were permibialised using 2% Tween-20 in PBS. Primary antibodies anti-mouse MAP2 (1:400), anti-mouse NSE (1:500), anti-Synapsin (1:500) and anti-CD133 (1:500) were used after Fc blocking with CD16/32 antibody (553141; BD Pharmingen). Respective Secondary antibodies: goat anti-mouse IgG/IgM Alexa flour 488 (1:1000), goat anti-Rabbit Alexa flour 546 (1:1000) were used.
Samples were acquired in BD FACS Canto II and analysed using BD Cell Quest Pro software. Efficacy was calculated as % of neuronal cells obtained to macrophages seeded (formula given in supplementary data).
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9

Immunophenotyping of Cell Populations

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First, all cell pellets were incubated with eFluor506 Fixable Viability dye (Invitrogen) and CD16/32 antibody (BD Biosciences) to label death cells and block non-specific antibody binding respectively. Next, cell surface staining was performed for 30 minutes at 4°C in cold PBS containing 1% bovine serum albumin (BSA, Sigma-Aldrich) and 0.02% sodium azide (Sigma-Aldrich) (FACS buffer). Staining of surface markers was performed using the fluorescent-labeled antibodies listed in Table 1. The stained cells were evaluated on an LSRFortessa flow cytometer (Beckton Dickinson) while analysis was performed with the FlowJo 10.5.3 software (Tree Star Inc., Ashland, OR, USA).
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