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6 protocols using cd4 af488

1

Phenotypic Analysis of Langerhans Cells

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Immature and mature LCs were phenotyped using CD1a-APC (BD Pharmingen), langerin-PE (Novocastra), CD86-FITC (BD Pharmingen), CD80-PE (BD Pharmingen), CD83-APC (BD Pharmingen), CD4-AF488 (Biolegend), CD195 (CCR5)-PE (BD Pharmingen) and unlabeled CXCR4 (R&D systems) for which secondary detection with Goat-anti-Mouse-A488 (Invitrogen) was used. HIV-1 infection and transmission samples were stained for CD1a-APC (LC marker), CD3-PerCP (T cell marker), and p24-PE (HIV-1 envelope protein, Beckman Coulter). Immature vaginal LCs were further sorted with a FacsARIA 3 laser sorter (BD Biosciences) after staining for CD1a-APC into CD1a positive and CD1a negative fractions. Samples were analysed using FACSCanto II flow cytometers (BD Biosciences) and data analysis was carried out with FlowJo V10.
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2

Flow Cytometry Analysis of Immune Cells

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Single-cell suspensions were obtained from individual mice and cell phenotypes were analyzed by flow cytometry as described previously (25 (link)) using the FACS Calibur machines (BD Biosciences). The gating strategy is displayed in Figure S1. The following labeled monoclonal antibodies were used: CD4-PErCp (dilution 1:300), CD4-AF488 (dilution 1:200), or CD4-PE (dilution 1:200) (all GK1.5, BioLegend), CXCR5-Fitc (L138D7, BioLegend, dilution 1:100), CD19-AF647 (6D5, BioLegend, dilution 1:400), B220-APC (RA3-6B2, BioLegend, dilution 1:400), F4/80-AF-488 (BM8, BioLegend, dilution 1:200), Ly6G-PE (1A8, BD Biosciences, dilution 1:200), CD44-FITC (IM7, BioLegend, dilution 1:150), CD62L-PE (MEL-14, BioLegend, dilution 1:200), CD11b-biotine (M1/70, dilution 1:100) with subsequent SAv-PerCP (BioLegend, dilution 1:500) staining. For intracellular staining of the lung cells, BD Fixation/Permeablization Kit (BD Biosciences) was used due to the recommendations. Briefly, after 16-17 hours of in vitro cultivation in the presence of mycobacterial antigens, cells were harvested, stained first for surface antigens, then fixed with Cytofix/cytoperm buffer for 30 minutes and then stained for intracellular cytokines with IFN-γ-PE (BD Biosciences dilution 1:150) and IL-17-PerCp (TC11-18H10.1, BioLegend, dilution 1:150) antibodies. Results are presented as mean ± SD.
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3

Multicolor Flow Cytometry of Heart Cells

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Cytofluorimetric analysis was performed as previously described [29 (link),30 (link)]. Briefly, hearts were collected and cut into small pieces with a blade, and then incubated with collagenase type IV for 1 h and 30′ at 37 °C with agitation. The obtained cell suspension was passed through a 70 μm and then a 40 μm cell strainer; the cells were then counted on a hemacytometer, collected by centrifugation at 1200 rpm, and suspended in 200 μL of calcium/magnesium-free PBS (phosphate-buffered saline) with 2% FBS (foetal bovine serum). They were then divided into two tubes for the staining. The cells were then incubated on ice for 30 min with the following antibodies: CD45 PE/Cy7, F4/80 APC, Ly6g PE Fluor 610, CD11b APC/Cy7, CD206 PERCP/Cy5.5 Ly6c BV-510, I-Ab FITC (tube 1) and CD45 PE/Cy7, CD3 PERCP Cy5.5, B220 BV-510, CD4 AF488, and CD8 PE (tube 2), all by Biolegend, (San Diego, CA, USA). Cells were then washed with 3 mL of calcium/magnesium-free PBS and resuspended in 200 μL of calcium/magnesium-free PBS with 2% FBS. Samples were acquired with a CyAn ADP (Agilent DAKO, Santa Clara, CA, USA), and acquired data were analysed using FlowJo software version 10.1.
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4

Isolation and Phenotyping of Human Visceral Adipose Tissue

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Visceral adipose tissue was collected from male bariatric surgery patients with IRB approval (HUM00074075) from the University of Michigan and Ann Arbor Veterans Affairs Healthcare System. We did not include or exclude any bariatric surgery samples based on race. Sex and racial classifications were made by the participant and extracted from the medical record.
Tissue was finely minced using surgical scissors (DR Instruments) and then digested in 3 mg/mL collagenase II (Invitrogen; 17101015) for 30 minutes. Digested tissue was then processed in the same manner as digested murine adipose tissue to obtain single-cell suspensions of SVF.
Cells were incubated in Fc Block for 5 minutes on ice before staining with indicated antibodies for 30 minutes at 4°C. Anti-human antibodies used included the following: AF488-CD4 (catalog 317419), PerCPy5.5-CD3 (catalog 300429), APC-CD25 (catalog 356109), APCcy7-CD8 (catalog 344713), APC-PD1 (catalog 329907), and PE-FoxP3 (catalog 320107) from BioLegend, and Live/Dead Fixable Dead Cell Violet Stain Kit (catalog L34955) from Invitrogen.
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5

PD1 Blockade Restores Adipose T Cell Function

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At 6 weeks of age, C57BL/6J mice were fed ND or HFD for 18 weeks to induce ATT impairment. At 24 weeks of age, mice were given injections of anti–mouse PD1 (catalog CD279, clone RMP1-14, Bio X Cell) or IgG2a isotype control, anti-trinitrophenol (clone 2A3, Bio X Cell) at 10 mg/kg every third day for 4 total injections. The day after the last injection, systemic metabolism was assessed by GTT. After refeeding and resting overnight, mice were sacrificed, and a fraction of fresh SVF was stained for flow cytometry analysis to assess basal T cell differences and ensure the PD1 antibody entered adipose tissue and blocked PD1. The following antibodies were used: AF488-CD4 (catalog 100423) and APCcy7-CD8 (catalog 100713) from BioLegend and PerCPcy5.5-CD3 (catalog 45-0031-82), PE-FoxP3 (catalog 12-4771-82), and Alex Fluor 647 anti–rat IgG2a (catalog 407511) from eBioscience. The remaining SVF was used for an ATT activation assay to assess whether PD1 blockade restored ATT inflammatory potential.
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6

Isolation and Characterization of Adipose-Derived Immune Cells

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The SVF was isolated from whole adipose tissue, as previously described (60 (link)). Briefly, adipose tissue depots were dissected and weighed. Tissue was then mechanically disrupted by mincing, and it was chemically digested by rocking tissue in 1 mg/mL collagenase IV (Sigma-Aldrich) at 37°C for 30 minutes. Cells were then quenched with RPMI + BSA media and filtered through 100 nm mesh prior to RBC lysis and subsequent filtering with 70 nm mesh filters.
Cells were incubated in Fc Block for 5 minutes on ice before staining with indicated antibodies for 30 minutes at 4°C. Anti-mouse antibodies used included the following: AF488-CD4 (catalog 100423), APCcy7-CD8 (catalog 100713), Brilliant Violet 605-CD279 (PD1) (catalog 135219), PE/Cy7-CD28 (catalog 102125), and APC-TCR-b (catalog 109211) from BioLegend, as well as PerCPcy5.5-CD3 (catalog 45-0031-82), APC-CD25 (catalog 17-0251-82), PE-FoxP3 (catalog 12-4771-82), and PEcy7-Ki67 (catalog 25-5698-82) from eBioscience and Live/dead Fixable Dead Cell Violet Stain Kit (catalog L34955) from Invitrogen.
Stained cells were washed twice with FACS buffer and fixed for intracellular staining using a FoxP3 transcription kit (BD Biosciences). Analysis was performed on an LSR Fortessa Flow Cytometer and analyzed with Flow Jo software (Tree Star Inc.).
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