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6 protocols using gm00232

1

Generation and Characterization of iPSCs

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The human PSC lines used in this study are listed in Supplementary Table 1. Fibroblasts from a 50-y-old female ALS patient carrying the D90A SOD1 mutation (ND29149, Coriell Institute, coriell.org), a 3-y-old male SMA patient (GM03813, Coriell Institute) and a 7-m-old SMA patient (GM00232, Coriell Institute) were reprogrammed using the non-integrating Sendai virus as described (Ban et al., 2011) to established iPSC lines ALS-D90A, SMA13 and SMA232. D90D iPSC line was established by correcting the D90A SOD1 mutation in ALS-D90A lines by TALEN technology (Chen et al., 2014). A4V SOD1 mutant ALS iPSC line, established with retrovirus, was obtained from Coriell (ND35671). Human ESC line H9 (WA09 line, NIH registry 0046) and normal iPSC line IMR90-4 were obtained from WiCell. All the PSCs were cultured on irradiated mouse embryonic fibroblasts (MEFs) as described in the standard protocol http://www.wicell.org.
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2

Immortalized Human Fibroblasts and SMA Silencing

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hTert-immortalized human fibroblasts (hTert-Fibroblasts) were obtained from Silvia Soddu (Regina Elena Cancer Institute, Italy)63 (link). As described previously14 (link), hTert-Fibroblasts were cultured in Dulbecco’s modified Eagle’s medium (DMEM, Gibco), supplemented with heat inactivated 10% FBS (Australian, Gibco), penicillin-streptomycin (Gibco) and GlutaMAX (Gibco), in a 5% CO2 humidified atmosphere, at 37 °C. Human fibroblasts from SMA type I patient (GM00232) and healthy control (GM08333) were obtained from Coriell Institute for Medical Research (Camden, NJ, USA), and cultured in DMEM medium supplemented with 10% FBS, penicillin/streptomycin, and GlutaMAX, in 5% CO2 humidified atmosphere, at 37 °C. For knockdown experiments, cells were transfected with Lipofectamine 2000 (Thermo Fisher Scientific) and a combination of three siRNA-27 duplexes targeting the human SMN1 gene (OriGene), following manufacturer’s instructions. Universal scrambled siRNA duplex was used as negative control. Cells were harvested after 48 h or 72 h post transfection.
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3

Modeling Spinal Muscular Atrophy in vitro

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hTert-immortalized human fibroblasts, were grown in Dulbecco’s modified Eagle’s medium (DMEM, Gibco, Grand Island, NY, USA), supplemented with heat-inactivated 10% FBS (Australian) (Gibco), penicillin-streptomycin (Gibco) and GlutaMAX (Gibco). Human fibroblasts from SMA type I patient (GM00232) and healthy control (GM08333) were obtained from Coriell Institute for Medical Research (Camden, NJ, USA), and grown in DMEM medium supplemented with 10% FBS, penicillin/streptomycin, and GlutaMAX. All cell cultures were maintained at 37 °C in a humidified atmosphere of 5% CO2. For knockdown experiments, cells were transfected with Lipofectamine 2000 (Thermo Fisher Scientific) and a combination of three siRNA-27 duplexes targeting the human SMN1 gene (OriGene, Rockville, MD, USA), following manufacturer’s instructions. Universal scrambled siRNA duplex was used as negative control. Cells were harvested after 48 h post transfection.
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4

Generation and Characterization of iPSCs

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The human PSC lines used in this study are listed in Supplementary Table 1. Fibroblasts from a 50-y-old female ALS patient carrying the D90A SOD1 mutation (ND29149, Coriell Institute, coriell.org), a 3-y-old male SMA patient (GM03813, Coriell Institute) and a 7-m-old SMA patient (GM00232, Coriell Institute) were reprogrammed using the non-integrating Sendai virus as described (Ban et al., 2011) to established iPSC lines ALS-D90A, SMA13 and SMA232. D90D iPSC line was established by correcting the D90A SOD1 mutation in ALS-D90A lines by TALEN technology (Chen et al., 2014). A4V SOD1 mutant ALS iPSC line, established with retrovirus, was obtained from Coriell (ND35671). Human ESC line H9 (WA09 line, NIH registry 0046) and normal iPSC line IMR90-4 were obtained from WiCell. All the PSCs were cultured on irradiated mouse embryonic fibroblasts (MEFs) as described in the standard protocol http://www.wicell.org.
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5

Derivation and Characterization of iPSCs from SMA Fibroblasts

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Control fibroblasts (GM03814 and GM03815, Coriell Institute, Supplementary Table S1) and type-I SMA fibroblasts (GM03813, GM09677 and GM00232, Coriell Institute, Supplementary Table S1) were reprogrammed to iPSCs using retrovirus containing the Yamanaka factors, OCT4, SOX2, KLF-4 and c-MYC, as previous reported28 (link). Pluripotency of the established iPSC lines was characterized by immunostaining for pluripotency markers and by teratoma formation in SCID mice. They were characterized for G banding karyotyping every 10 passages37 (link). In addition, human WA09 ESC line (also known as H9, WiCell institute, NIH registry 0046) were used as an additional control. SMN1 knockdown (SMNi) and luciferase control (Luc) ESC lines were described before25 (link). The PSCs were maintained on irradiated mouse embryonic fibroblasts as previously described38 (link).
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6

Cell Culture Conditions for Biomedical Research

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SMA Type 1 fibroblast cells (Coriell Institute, GM00232, EMEM medium with 15% fetal bovine serum (FBS), 200 U/ml penicillin/streptomycin antibiotic, 2 mM L-glutamine and 1X NEAA), HEK293T (Gibco DMEM medium with 10% FBS and 1% penicillin/streptomycin, L-Glutamine medium), HeLa (Gibco DMEM medium with 10% FBS and 1% penicillin/streptomycin, L-Glutamine), A172 (DMEM medium with 15% FBS, 200 U/ml penicillin/streptomycin antibiotic, 2 mM L-glutamine), SH-SY5Y (DMEM medium with 15% FBS, 200 U/ml penicillin/streptomycin antibiotic, 2 mM L-glutamine, 1% sodium pyruvate), U87 (DMEM medium with 15% fetal bovine serum, 200 U/ml penicillin/streptomycin antibiotic, containing 2 mM L-glutamine) and HMC3 (MEM medium with 15% FBS, 200 U/ml penicillin/streptomycin antibiotic, 2 mM L-glutamine, 1% sodium pyruvate) were cultured. Cells were incubated at 37 o C, 5% CO2.
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