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Donkey anti mouse alexa fluor 488

Manufactured by Jackson ImmunoResearch
Sourced in United States, Panama

Donkey anti-mouse Alexa Fluor 488 is a secondary antibody conjugated with the Alexa Fluor 488 fluorescent dye. It is designed to detect and visualize mouse primary antibodies in various immunoassays and imaging applications.

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27 protocols using donkey anti mouse alexa fluor 488

1

Larval Immunostaining Technique

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Third instar larvae were dissected and stained as described previously (Kim et al., 2013 (link); Wang et al., 2013 (link)). Primary antibodies used were: mouse anti-GFP (1:100, Sigma, RRID:AB_259941); chicken anti-GFP (1:2500, Aves Laboratories, RRID:AB_2307313); rabbit anti-RFP (1:5000, Rockland, RRID:AB_2209751); and rat anti-HA (1:250, Roche, RRID:AB_390915). Secondary antibodies used were (1:500, Jackson ImmunoResearch): donkey anti-mouse Alexa Fluor 488 (RRID:AB_2340846), anti-chicken Alexa Fluor 488 (RRID:AB_2340375), anti-chicken Alexa Fluor 647 (RRID:AB_2340380), anti-rabbit Rhodamine RX (RRID:AB_2340613), and anti-rat Alexa Fluor 647 (RRID:AB_2340694).
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2

Immunohistochemistry of P-IRE1α in Multiple Sclerosis

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Frozen brain tissue from 4 MS patients and 4 healthy control individuals was cut into 7 μm thick sections, air dried, and fixed in ice-cold acetone for 10 minutes. Sections were delipidised in 70% ethanol for 5 minutes, followed by blocking of non-specific binding with 10% donkey serum (#D9663, Sigma-Aldrich). Rabbit anti-human P-IRE1α (#NB100–2323, Novus Biologicals, 1:50) was incubated with mouse anti-human GFAP-Cy3 (#C9205, Sigma-Aldrich, 1:50), mouse anti-human NeuN (#MAB377, Millipore, 1:50), mouse anti-human CNPase (#MAB326, Millipore, 1:100) or mouse anti-human CD14 (#555397, BD Biosciences, 1:10) in blocking buffer overnight at 4C. The next day slides were washed with 0.05% PBS-Tween and incubated with a mixture of donkey anti-rabbit Alexa Fluor 488 (#R37118, Life Technologies, 1:400) and donkey anti-mouse-Cy3 (#715–165-151, Jackson ImmunoResearch, 1:200) or donkey anti-rabbit-Rhodamine Red X (#711–295-152, Jackson ImmunoResearch, 1:400) and donkey anti-mouse-Alexa Fluor 488 (Jackson ImmunoResearch, 1:400) for 40 minutes at room temperature. Sections were mounted in Mowiol (#81381, Sigma-Aldrich) containing TOPRO-3 (#T3605, Invitrogen). In secondary only controls, primary antibodies were omitted to control for non-specific binding.
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3

Dual-Immunolabeling of Oxytocin and Fos

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CRH-reporter mice were used for double-immunofluorescent labeling of OT and Fos. The protocol used was identical to the one used above (2.4.2) except for the addition of primary antibody (mouse anti-oxytocin neurophysin, PS-38 1:400; generously provided by Dr. Gainer, NIH) [11 (link)] to the blocking solution containing Fos antibody on day one. Additionally, the secondary antibody, donkey anti-mouse Alexa-Fluor 488 (1:500; Jackson ImmunoResearch, West Grove, Pennsylvania), was mixed with donkey anti-rabbit Alexa-Fluor 647 in blocking solution on day two.
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4

Immunofluorescence Markers for Microglia and Macrophages

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Antibodies used were rabbit anti-Iba1 (WAKO, AB_839504, 1:600), rat anti-mouse CD68 (Bio-rad, AB_322219, 1:500), rat anti-CD86 (BD Pharmingen, AB_394994, 1:100), goat anti-CD206 (anti mMMR, R&D Systems, AB_2063012, 1:00), goat anti-YM1 (R&D Systems, AB_2079008, 1:250), and rat anti-mouse MARCO (Bio-rad, AB_322923, 1:500). Secondary Antibodies from Jackson Labs: Donkey anti-Rabbit Alexa Fluor 647, AB_2492288; Donkey anti-mouse Alexa Fluor 488, AB_2340846; Donkey anti-rat Alexa Fluor 488, AB_2340683; Donkey anti-goat Alexa Fluor 488, AB_2340428.
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5

Immunolabeling of Esr1-expressing Neurons

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Brains from Esr1Cre/RiboTag and Esr1Cre/SunTag mice were immunolabeled using the following primary antisera: mouse anti-HA (1:1,000), sheep anti-GFP (1:2,000), rabbit anti-Esrl (1:1,000), and rat anti-mCherry (1:2,000). Primary antisera were detected with the following secondary antibodies: donkey anti-sheep Alexa Fluor 488 (1:300), donkey anti-rat Cy3 (1:800), donkey anti-mouse Alexa Fluor 488 (1:300), and donkey anti-rabbit Alexa Fluor Cy3 (1:800) (Jackson Immunoresearch). Sections were counterstained with DAPI (0.2 μg/mL) and imaged with a confocal microscope (Zeiss). Images were processed using ImageJ.
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6

Immunoprecipitation and Western Blotting with Antibodies

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Primary antibodies include anti-V5 (R96025, ThermoFisher Scientific), SAMD9 (HPA021319, Sigma-Aldrich), SAMD9L (HPA019465, Sigma-Aldrich), β-actin (A1978, Sigma-Aldrich), FLAG (F3165, Sigma-Aldrich), FLAG-HRP (A8592, Sigma-Aldrich), EEA1 (3288S, Cell Signaling Technologies), and TIA-1 (sc1751, Santa Cruz Biotechnology) that were used for immunoprecipitation (IP), Western blotting, and immunofluorescent (IF) staining according to the manufacturer’s standard protocol. Secondary antibodies include goat anti-mouse horseradish peroxidase (HRP) (Jackson ImmunoResearch), goat anti-rabbit HRP (Jackson ImmunoResearch), mouse TrueBlot Ultra IgG-HRP (Rockland), donkey anti-mouse AlexaFluor 488 (Jackson ImmunoResearch), donkey anti-rabbit AlexaFluor 594 (Jackson ImmunoResearch), and chicken anti-goat AlexaFluor 647 (Life Technologies).
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7

Quantitative Immunofluorescence Analysis of Protein Localization in Liver Biopsy Samples

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FFPE liver biopsy tissue slides were double stained for ubiquitin (Millipore, Temecula, CA) and the second protein as listed in Table 1. ubiquitin was detected using the second antibody donkey anti-mouse Alexa Fluor 594 (Jackson Labs, West Grove, PA), while the other protein was detected using the second antibody donkey anti-rabbit Alexa Fluor 488 or donkey anti-mouse Alexa Fluor 488 (Jackson Labs, West Grove, PA). All slides were stained with the nuclear stain DAPI (Molecular Probes, Eugene, OR). The fluorescence intensity of staining of the protein of interest was measured quantitatively using 40x objective magnification and a standard exposure time of 800 ms using a Nikon 400 fluorescent microscope with three filters (FITC-green, Texas-red, and tricolor), and the Nikon morphometric system. The results were displayed as a graph attached to the immunofluorescent photography using a screen snip. The staining was compared among MDB forming AH hepatocytes, neighboring non-MDB forming AH hepatocytes, and control normal hepatocytes.
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8

Ubiquitin and Chaperone Protein Localization

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Tissue slides were then prepared from the FFPE blocks. The slides were double stained for ubiquitin (Millipore, Temecula, CA) and either Mca1, Hsp104, Hsp40, Ydj1, Ssa1, VCP/p97, or p62. ubiquitin was detected using the red fluorescent(Texas Red) antibody, donkey anti-mouse Alexa Fluor 594 (Jackson Labs, West Grove, PA), while Mca1, Hsp104, Hsp40, Ydj1, Ssa1, VCP/p97, and p62 were detected using the green fluorescent(FITC) antibody, donkey anti-rabbit Alexa Fluor 488 or donkey anti-mouse Alexa Fluor 488 (Jackson Labs, West Grove, PA). The nuclei were stained with DAPI blue. The double stain was detected using a tricolor filter. All biopsies were stained at one time to allow accurate comparisons between groups.
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9

SARS-CoV-2 N Antibody Detection

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The antibodies used in this study include: Immunofluorescence: rabbit-anti-SARS-CoV-2 N antibody (gift from Kwok-Yung Yuen, University of Hong Kong), mouse anti-HM1.24 (BST2) (a gift from Chugai Pharmaceutical Co., Kanagawa, Japan), rat anti-FLAG-AlexaFluor-488 (Biolegend, #637317), mouse anti-HA-AlexaFluor-594 (Biolegend, #901511), donkey anti-mouse-AlexaFluor-488 (Jackson ImmunoResearch, #715-545-150), donkey anti-mouse-Rhodamine-Red-X (Jackson ImmunoResearch, #715-295-150), and mouse anti-V5 tag (Invitrogen, R960-25). Western blotting: mouse monoclonal anti-Orf7a (GeneTex #GTX632602), rabbit polyclonal anti-BST2 (NIH AIDS Reagent Program, Division of AIDS, NIAID, NIH: Anti-BST-2 Polyclonal (cat #11721) from Drs. Klaus Strebel and Amy Andrew), mouse monoclonal anti-V5 tag (Invitrogen, #R960-25), mouse monoclonal anti-GAPDH (GeneTex, #GTX627408), mouse monoclonal anti-FLAG M2 (Sigma, #F1804), rabbit monoclonal anti-β-actin antibody (Cell Signaling, #4970) and rabbit monoclonal anti-CoxIV antibody (Cell Signaling #4850).
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10

Neuroanatomical Mapping of Orexin and GABA in Mouse Brain

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Mice were deeply anesthetized with isoflurane and transcardially perfused with 4% paraformaldehyde followed by 0.9% saline. Brains were postfixed for 2 h in 4% paraformaldehyde at 4 °C and were then serially transferred to 30% sucrose in phosphate-buffered saline (PBS, PH = 7.4). The brains were coronally sectioned every 40 μm using a Leica cryostat. The sectioned brains were washed with PBS for 5 min three times consecutively, and blocked with 5% normal donkey serum in PBS with Triton X-100 for 2 h at 24–26 °C. Primary antibodies, including rabbit anti-glutamate (1:1000, Sigma-Aldrich), mouse anti-orexin A (1:200, Santa Cruz), mouse anti-OxR2 (1:200, GeneTex), rabbit anti-c-Fos (1:1000, Sigma-Aldrich) and rabbit anti-GABA (1:200, GeneTex) were incubated at 4 °C overnight. The slices were washed with PBS. The incubation of secondary antibodies, including donkey anti-rabbit Alexa Fluor 488 (1:400, Jackson ImmunoResearch), donkey anti-mouse Alexa Fluor 488 (1:400, Jackson ImmunoResearch), donkey anti-rabbit Cy3 (1:400, Jackson ImmunoResearch) or donkey anti-mouse Cy3 (1:400, Jackson ImmunoResearch), were then incubated for 2 h at 24–26 °C. The brain slices were washed with PBS again after incubation, and sections were mounted in Fluoromount-G (Millipore) and imaged using a confocal microscope (FV1200, Olympus).
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