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4 protocols using pepstain a

1

Autophagy Modulation in Cell Biology

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BA (Meilunbio, Dalian, China; MB5971), Chloroquine (Sigma, St. Louis, MO, USA; C6628), E-64d (Sigma, E8640) and Pepstain A (Sigma, P4265) were dissolved in DMSO (Sigma, D2650). Acridine orange (Sigma, A6014) and 3-MA (Meilunbio, MB5063) were dissolved in PBS. MG132 (Meilunbio, MB5137), Etoposide (Meilunbio, MB1102-S) and CHX (Meilunbio, MB2208) were dissolved in DMSO. LC3 (MBL, Beijing, China; PM036) was bought for immunoblot or immunofluorescence analysis. Antibodies including AKT, phosphorylation of AKT (Ser473; 4060), MTOR, phosphorylation of MTOR (Ser2443; 5535), PARP (116 and 89 kd; 9542S), BAX (5023), phosphorylation of p53 (Ser15; 9286) and GAPDH (Santa Cruz Biotechnology(CA, USA) 5174) were purchased from CST (Beverly, MA, USA). Cleaved-PARP antibody was purchased from Sigma (SAB4500487). p53 (SC-126) and LAMP1 (SC-5570) were purchased from Santa Cruz Biotechnology (CA, USA) for immunoblot or immunofluorescence analyses.
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2

Reagent Inventory for Cell Biology Experiments

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Lipofectamine 2000 was from Invitrogen (Carlsbad, CA). Poly (dAdT), Cytochalasin D and Pepstain A, acridine orange and bromodeoxyuridine were from Sigma-Aldrich. Bafilomycin A1 and giemsa stain were from Fluka Analytical. Alexa Fluor 546-conjugated dextran, Lysotracker, Cell Mask Plasma membrane stain, DAPI, SYTO 60, Calcein AM and propidium iodide were from Molecular Probes/Invitrogen (Carlsbad, CA). Nigericin was from Invivogen; CA-074Me was from Enzo LifeSciences; Cat L inhibitor was from Calbiochem; uricase (Elitek) was from Sanofi-Aventis. DMEM medium was from Cellgro (Manassas, VA) and low endotoxin FBS was from Atlas Biologicals (Fort Collins, CO). CpG DNA oligodeoxynucleotide 1826 and CpG-Alexa 647 and AT2-A647 were obtained from IDT (Coralville, IA). Pf 3D7 genomic DNA was purified as described (Parroche et al., 2007 (link)). Pf HB3_B2, Pf T9/94 and Pf Dd2 genomic DNA were obtained from the malaria research and reference resource center at NIAID.
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3

Taxane-induced Protein Expression Analysis

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Cells at desired concentrations were seeded into wells of a plastic plate, Petri dishes or culture flasks and taxanes were applied after a 24-h preincubation. After the incubation period, cells were harvested by low-speed centrifugation (2000 rpm, 9 min, 4°C), washed in PBS and centrifuged. Cell pellets were stored at -80°C. Frozen pellets were resuspended in RIPA buffer (Sigma Aldrich) containing a 1% mixture of protease inhibitors P8340 (AEBSF 104 mM, Aprotinin 80 μM, Bestatin 4 mM, E-64 1.4 mM, Leupeptin 2 mM, Pepstain A 1.5 mM, Sigma Aldrich). Protein lysates were centrifuged (14,000 rpm, 20 min, 4°C) and the supernatants containing proteins were stored at -80°C. Protein lysates were than analyzed using western blot.
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4

GC Cell Line Treatment and Analysis

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The SGC-7901 and BGC-823 human GC cell lines were purchased from the Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences (Shanghai China), and were incubated in RPMI-1640 (Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA) supplemented with 10% FBS (Gibco; Thermo Fisher Scientific, Inc.). All cell lines were grown in a humidified chamber supplemented with 5% CO2 at 37°C. Norepinephrine (10 µM; Sigma, Shanghai, China), 5 µM terbutaline (Sigma), 1 µM xamoterol (Tocris Chemicals, Shanghai, China), 10 µM propranolol (Sigma), 50 nMH 89 2HCL (Selleck Chemicals, Shanghai, China), 5 µM Chloroquine (Selleck Chemicals) in PBS were used to treat the cells for 24 h prior to testing. In addition, 5 µg/ml E64d (Sigma) and 5 µg/ml pepstain A (Sigma) were used to treat the cells following Norepinephrine treatment.
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