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5 protocols using dl norvaline

1

Amino Acid Standards and Dietary Supplements Analysis

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All reagents were of analytical grade. Methanol (MeOH), acetonitrile (ACN), and acetic acid (HAc) were acquired from Scharlau Chemie (Barcelona, Spain). Triethylamine (TEA) and 9-fluorenylmethoxycarbonyl (FMOC) chloride were obtained from Fluka (Buchs, Switzerland). Ammonium hydroxide (NH3·H2O), boric acid (H3BO3) and pentane were from Sigma (St. Louis, Missouri, USA), and ammonium acetate was from Merck (Darmstadt, Germany). 10,11-dihydroquinidine, 2,2’-azobisisobutyronitrile (AIBN), 3-(trimethoxysilyl)-propylmethacrylate (γ-MAPS), vinyltrimethoxysilane (VTMS), cetyltrimethylammonium bromide (CTAB), tetramethoxysilane (TMOS) and ethylene glycol (EG) were acquired from Aladdin Chemicals (Shanghai, China). dl-arginine, dl-histidine, dl-lysine, dl-serine, dl-threonine, dl-asparagine, dl-glutamine, dl-cysteine, dl-proline, dl-alanine, dl-valine, dl-leucine, dl-methionine, dl-phenylalanine, dl-tyrosine, d-tryptophan, l-tryptophan, dl-ornithine, dl-citrulline standards were from Fluka (Buchs, Switzerland), while dl-isoleucine, dl-carnitine, dl-aspartic acid, dl-glutamic acid, dl-norvaline, l-norvaline, dl-norleucine, dl-DOPA, dl-pyroglutamic acid and dl-methionine sulfone were obtained from Sigma (St. Louis, Missouri, USA). FMOC-amino acids were synthesized as reported previously [29 (link),30 (link)]. The dietary supplements were obtained in capsule form from online sources.
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2

Amino Acid Quantification in Fermentation

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Pre-column derivatization with 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate (AQC) was used to determine and quantify amino acids (Ala, Arg, Asn, Asp, Cys, Gln, Glu, Gly, His, Ile, Leu, Lys, Met, Phe, Pro, Ser, Thr, Trp, Tyr, Val) in the fermentation supernatant. The AccQ-Tag reaction was performed according to the supplier’s instructions (UPLC Amino Acid Analysis Solution; Waters, MA, USA). Fermentation samples were diluted to the amino acid concentration range of the amino acid standard with three concentrations ranging from 50 to 400 nmol/mL. The amino acid DL-Norvaline (Sigma-Aldrich, MO, USA) was added to Amino Acid Standard Solution (5061-3330; Agilent, CA, USA) and the fermentation samples as an internal standard. The use of an internal standard with the calibration standard was used to correct volumetric errors introduced during sample preparation.
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3

Synthesis and Characterization of Amino Acid Co-Crystals

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d-2-aminobutyric acid, d-norvaline, d-norleucine, l-2-aminoheptanoic acid, d-2-amino-octanoic acid, l-2-aminooctanoic acid, d-methionine, dl-2-aminobutyric acid, dl-norvaline, dl-norleucine, dl-2-aminoheptanoic acid, dl-2-amino-octanoic acid and dl-methionine were purchased from Sigma–Aldrich and used without further purification. The racemic amino acids mentioned here were recrystallized by solvent evaporation of an aqueous solution or hanging drop crystallisation as described by Smets et al. (2015 ▸ ), and subsequently measured using DSC. Liquid-assisted grinding was performed on a Retsch Mixer Mill MM 400 at 30 Hz to form co-crystals for the following quasi-racemates in a 1:1 molar ratio (100 mg in total); d-Abu:l-Nva, d-Abu:l-Hep, d-Nva:l-Hep, d-Nle:l-Hep, d-Met:l-Hep, d-Oct:l-Hep, d-Abu:l-Oct, d-Nva:l-Oct, d-Nle:l-Oct and d-Met:l-Oct. The samples were ground in a 2.0 ml Eppendorf SafeLock microcentrifuge tube with a 0.9 mm ball for 25 min using 10 µl ethanol, and a second time for 25 min after adding another 10 µl ethanol, and subsequently measured using DSC.
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4

Preparation of Amino Acid Solutions

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Glycine (E. Merck, INDIA), D,L-alanine (E. Merck, INDIA), D,L-nor-valine (>99.8%, Sigma Aldrich) and D,L-serine (>99.8 %, E. Merck, INDIA) were used after drying in vacuum desiccators at 370 K for 7 days. Potassium sulfate (K2SO4) of purity 99 % procured from E Merck, India. It was then dried in hot air oven at 500 K for 7 days and kept it for 3 days in vacuum desiccator prior to use. Triple distilled water (conductivity 0.6 μS/cm) was used in the entire study to prepare all aqueous solutions. Specifications of the compounds were summarized in Table 1.
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5

Mycobacterial Lipid Profiling via TLC

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Wild-type and MceG strains were cultured in minimal media with 18 mM glycerol and 0.05% Tween80 in normal conditions. Low aeration conditions were performed by culturing the cells in 50 ml Falcon tubes with 45 ml of 7H9 medium that were parafilm-sealed and cultured at 37 ºC in static conditions. After 4 days of incubation, the cells were used to inoculate minimal media with 18 mM glycerol and normal aeration conditions. For the stringent response induction, DL-norvaline (0.5 mg ml -1 ) (Sigma) was added when the cells growing in minimal media with 18 mM glycerol reached an OD600 of 0.6. In each case, 50 ml aliquots were collected at different growth phases, washed with PBS and kept at -80 ºC. For the MAMEs extraction, frozen samples were lyophilized and 25 mg of dry weight were transferred to Pyrex glass tubes with PTFE caps (Supelco). MAMEs extraction was performed as previously described by Slayden and Barry, 2001 . TLC of MAMEs was performed on Silica Gel-60 plates (Meck) and developed a total of 5 times using petroleum ether/diethyl ether (95:5, v/v). Individual MAMEs were visualized by charring at 100 ºC using 5% molybdophosphoric acid in ethanol (Besra, 1998) .
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