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Ab 7500 real time pcr system

Manufactured by Takara Bio

The AB 7500 Real-Time PCR System is a versatile and accurate instrument for performing real-time polymerase chain reaction (PCR) analysis. It is designed to provide reliable and consistent results for a wide range of applications, including gene expression analysis, pathogen detection, and SNP genotyping.

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2 protocols using ab 7500 real time pcr system

1

Comprehensive RNA Extraction and Quantification

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RNAiso plus (Takara, Japan) was used for total RNA isolation according to manufacturer’s instructions. A HyperScript III miRNA 1st Strand cDNA Synthesis Kit (NovalBio, China), a CR0232 lncRNA First Strand cDNA Synthesis Kit (Cellregen,China), and Hifair® III 1st Strand cDNA Synthesis SuperMix for qPCR (Yeasen, China) were used for miRNA reverse transcription, lncRNA reverse transcription, and mRNA reverse transcription, respectively. Quantitative PCR was performed to analyze cDNA using an AB 7500 Real-Time PCR System with SYBR Green (Takara). GAPDH and U6 were used as the internal controls. The relative expression level of RNAs was determined using the 2−ΔΔCt method. The sequences of the primers used are presented in Table 1.

The Sequences of the Primers in This Study

PrimerSequences
miR-3940-3pForward: 5′-CTCAAGGACCACCGCATC-3′
Reverse: 5′-ATCTGCAAGGGACAGCACAG-3′
BBOX1-AS1Forward: 5ʹ-TGTGTGTTTCCTGAGGCCTC-3’
Reverse: 5ʹ-CGCCTCTCTTGGAACACCTT-3’
KPNA2Forward: 5′-CTGGGACATCAGAACAAACCAAG-3′
Reverse: 5′-ACACTGAGCCATCACCTGCAAT-3′
GAPDHForward: 5ʹ-CTCCTCCTGTTCGACAGTCAGC-3’
Reverse: 5ʹ-CCCAATACGACCAAATCCGTT-3’
U6Forward: 5ʹ-CTCGCTTCGGCAGCACA-3’
Reverse: 5ʹ-AACGCTTCACGAATTTGCGT-3’
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2

Quantitative Gene Expression Analysis in Apple

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The quantitative measurement of gene expression was performed using the cDNA samples with an AB7500 Real-time PCR System and the SYBR Green fluorescence dye (Takara) (Li et al., 2012 (link)).
The genes analyzed were the following: Fe deficiency-induced transcription factor MxFIT1 (NCBI: XP_008360009.1), Fe2+ transporter MxIRT1 (NCBI: AAO17059.1), Malus × domestica zinc finger protein MxZAT12c (NCBI: XM_008371622), putative E3 ligase BRUTUS MxBTSa (NCBI: XP_008393323.1). The sequences of all of the genes in the apple genome were obtained from the website http://genomics.research.iasma.it/ via its BLAST (basic local alignment search tool) service. Based on the BLASTP results in NCBI4 for those proteins encoded by the genes examined, primers were designed using Primer Premier 5 (Primer, Co., Canada). The β-Actin was used as the reference gene. The primer sets used are listed in Supplementary Table S1.
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