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3 protocols using anti ha 11 clone 16b12

1

Antibody Characterization and Compound Sourcing

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Anti-Hsp70/Hsc70 (SMC-104), anti-Hsp90 total, 4F3.E8 (SMC-149) and anti-DJB1, 3B9.E6 (SMC-145D) were purchased from StressMarq. Anti-CHIP (C9243), anti-Flag M2 (F1804) were from Sigma-Aldrich. Anti-DJA1, KA2A5.6 (sc-59554), anti-myc (SC-40) and anti-RhoB (SC-180) were from Santa Cruz Biotechnology. Anti-HA.11 clone 16B12 (901501) was from BioLegend. CFTR antibodies M3A7 (MAB3480) and L12B4 (MAB3484) were from EMD Millipore. Anti-HOP (DS14F5) was from Enzo Lifesciences. Anti-BiP, clone 40/BiP (610979) was from BD Biosciences, and anti-CHOP, 9C8 (MA1-250) was from ThermoFisher Scientific. Anti-DJA2 antibodies were raised in rabbits as previously described [67 (link)].
All chemicals were purchased from Sigma-Aldrich unless otherwise specified. Compounds MKT077 (4621) and VER155008 (3803) were purchased from Tocris Bioscience. VX809 (S1565) was purchased from Selleckchem. Apoptozole (17675) was purchased from Cayman Chemicals. Bafilomycin A1 (10–2060) was purchased from Focus Biomolecules. FLAG peptide (DK-8) (LT12022) was purchased from LifeTein.
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2

Western Blot Analysis of HA-tagged Proteins

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We subjected cell lysates from AX4 (negative control), and strains expressing PkaC-HA (positive control), and GoldenBraid-assembled HA-jGCaMP7s (test) to SDS-PAGE through 12% gels (Bio-Rad, Hercules, CA, USA). We electro-transferred the proteins to nitrocellulose membranes in Tris/methanol transfer buffer (25 mM Tris [pH 7.6] and 20% (v/v) methanol) at 100 V for 1 h. We blocked the membranes with Tris-buffered saline with Tween 20 (TBST; pH 7.6, 0.5% Tween 20) and 5% nonfat milk for 1 h at room temperature, incubated with primary antibody (mouse anti-HA antibody, 1:500 dilution, BioLegend (San Diego, CA, USA); anti-HA.11, clone 16B12, Lot B220767) for 1 h at room temperature. We washed the blots with TBST three times for 10 min each and incubated with secondary horseradish peroxidase-conjugated goat anti-mouse IgG antibodies (Thermo Fisher Scientific) for 1 h at 1:10,000 dilution. We repeated the wash and developed the blots with a chemiluminescent substrate kit (SuperSignal WestPico, Thermo Fisher Scientific) according to the manufacturer's recommended protocol.
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3

Western Blot Analysis of Protein Expression

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Cells were lysed in lysis buffer (50 mM Tris-HCl -pH 7.4, 150 mM NaCl, 1 mM EDTA, 0.1% SDS, 1% Triton-X, 1mM DTT, 1 mM PMSF, and supplemented with complete protease inhibitor mix (Roche),) for 30 min on ice, followed by centrifugation at maximum speed for 10 min at 4°C. An equal volume of 4x Laemmli buffer was added to the supernatants and the samples were boiled for 5 min. Approximately 1x10 5 cells were separated on an SDS-PAGE gel, followed by blotting to nitrocellulose membranes. The membranes were blocked in 5% BSA in TBST, incubated with primary antibodies, followed by an incubation with horseradish peroxidase (HRP) secondary antibodies (Mouse IgG HRP Linked Whole Ab-GE Healthcare, #NA931, 1:5000; Rabbit IgG HRP Linked Whole Ab-GE Healthcare, #NA934, 1:5000) in 3% milk in TBST. Primary antibodies: M2 Flag (Sigma Aldrich, 1:10,000 dilution), anti-c-Myc antibody clone 9E10 (Millipore, 1:1000 dilution), anti-HA.11 clone 16B12 (Biolegend, previously Covance Catalog# MMS-101P, 1:1000 dilution) and gamma-tubulin clone GTU-88 (Sigma Aldrich, 1:5000 dilution). Streptavidin-HRP (Invitrogen, #1953050) was used for detection of biotinylated proteins.
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