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5 protocols using methanol

1

Urinary Albumin and Creatinine Quantification

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Spot urine was collected and 2 μL of each urine sample, and BSA standards at 0, 1, 3, and 10 μg, were separated by SDS‐PAGE on a NuPAGE Novex 4–12% Bis‐Tris gel (Thermo Fisher Scientific). After electrophoresis, the gel was immersed in fixing solution (50% (v/v) methanol (Fisher Scientific), 10% (v/v) acetic acid (Acros)) for 1 h, incubated for 20 min with agitation in staining solution (0.1% (w/v) Comassie brilliant blue R‐250 (Bio‐Rad), 50% (v/v) methanol, 10% (v/v) acetic acid), and finally incubated several times in destaining solution (40% (v/v) methanol, 10% (v/v) acetic acid) until destained.
Urinary albumin content in spot urine was assessed using Albuwell M indirect ELISA (Exocell) and urinary creatinine content was measured, using Creatinine Companion kit (Exocell). Both measurements were performed according to manufacturer′s instructions. Albumin:creatinine ratio was calculated by dividing μg albumin/mL urine with mg creatinine/mL urine, getting the ratio μg albumin/mg creatinine.
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2

Western Blot Protein Detection Protocol

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Proteins were resolved by SDS-PAGE as described [31] (link). Gels were transferred to PVDF (polyvinylidene difluoride) membranes pretreated with methanol (Biorad, Hercules, CA) in 25 mM Tris, 192 mM glycine. Membranes were blocked with 1% BSA in PBS containing 0.1% Tween 20 for 1 hour at room temperature. Membranes were then probed with the primary antibodies for either overnight at 4°C or 2 hours at room temperature and incubated with Horseradish peroxidase-conjugated secondary antibodies (Sigma). Signals were enhanced with chemiluminescence reagents (Perkin Elmer Life Sciences, Boston, MA) for detection of Western signals using a Fujifilm LAS-4000 scanner or Autoradiography Film (Molecular Technologies, St. Louis MS).
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3

Protein Extraction and Western Blotting

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Lysis of cells was performed with NP40-containing lysis buffer (150 mM NaCl, 50 mM Tris at pH 7.5–7.8, 5 mM NaF, 0.5% NP40, 1 mM sodium vanadate, Complete protease inhibitor cocktail (Roche) for 10 min on ice followed by centrifugation to remove cell debris. For nuclear proteins, NE-PER™ Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific) were used according to the manufacturer’s protocol. Protein concentrations were determined with the Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific). Proteins were separated on precast 4–15% Mini Protean TGX gels at 190 V using the Mini Protean electrophoresis system and TGS buffer and were blotted onto nitrocellulose membranes at 70V for 2 h in a Mini Trans-Blot Cell by using the TG buffer supplemented with 20% methanol (all BioRad). All antibodies were used as recommended by the manufacturer.
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4

Phenolic and Antioxidant Analysis of Onions

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The reagents for total phenolic and antioxidant activity analysis as well as the materials and enzymes for the in vitro digestion were purchased from Sigma-Aldrich (Milan, Italy). Methanol, formic acid and acetonitrile for phenolic extraction and mass spectrometry analysis were obtained from BioRad (Hercules, CA, USA). Ferulic acid (catalogue number 52229), caffeic acid (catalogue number 51868), protocatechuic acid (catalogue number 03930590), quercetin-3-O-glucoside (catalogue number 16654), epicatechin (catalogue number 68097) and cyanidin-3-O-glucoside (catalogue number PHL89616) were supplied by Sigma-Aldrich (Milan, Italy). Yellow-skinned (YSO) and red-skinned onion (RSO) samples (Allium cepa L.) were purchased in a local supermarket (Reggio Emilia, Italy).
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5

Cytotoxicity Assay Protocol

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Trypan blue, Dimethylsulfoxide (DMSO), Vincristine sulfate, Dulbecco's Modified Eagle Medium (DMEM), Fetal Bovine Serum (FBS), Penicillin-streptomycin, and 3-(4, 5-dimethyl-2-thiazolyl)-2, 5-diphenyl-2H-tetrazolium bromide (MTT) solution were purchased from Thermo Fisher Scientific, USA. Standard antibiotic disks and methanol were procured from Bio-Rad, USA and Merck, Germany, respectively. Nutrient agar media and nutrient broth media were obtained from Liofilchem, Italy. All other reagents and chemicals used in this work were of reagent rating and bought from Sigma-Aldrich Corporation, Germany.
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