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Plasmid purification kit

Manufactured by New England Biolabs

The Plasmid Purification Kit is a laboratory product designed to efficiently extract and purify plasmid DNA from bacterial cultures. It utilizes a column-based method to capture and concentrate the plasmid DNA, allowing for its separation from other cellular components.

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2 protocols using plasmid purification kit

1

Cloning VEGFA-eGFP Construct in pOET6 Vector

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The human VEGFA in a pcDNA3.1 + eGFP vector was purchased from GenScript. The EGFP-tagged VEGFA gene was excised from the original plasmid using EcoRI and XbaI Fast Digest restriction enzymes (Thermo Fisher, Waltham, MA, USA). The resultant genes of interest were run on a 1% (m/v) agarose gel containing SYBR Green (Thermo Fisher) at 100 Volts. After one hour, the DNA bands were visualized using a blue light transilluminator (miniPCR bio, Boston, MA, USA). Each gene fragment was excised and purified using NEB’s Gel Extraction Kit. The genes of interest were each ligated, using Instant Sticky End Ligase (NEB), into the pOET6 plasmid with compatible sticky ends. The VEGFA-eGFP-pOET6 plasmid was then chemically transformed into DH5alpha E. coli (Thermo Fisher) and selected for using the ampicillin resistance present within the pOET6 plasmid (MJS BioLynx Inc., Brockville, ON, Canada). Several different LB agar plates were streaked with different dilutions of the transformed bacteria and grown overnight. The next day, the resistant colonies containing the gene of interest were selected and grown overnight to amplify the plasmid. The plasmid was then extracted and purified using NEB’s plasmid purification kit. The resultant purified pOET6 plasmid, each with a gene of interest, was used for all future virus production steps or frozen at −20 °C for future use.
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2

Genomic DNA Isolation and Recombinant Plasmid Construction

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Genomic DNA of L. interrogans serovar Copenhageni was isolated from a 7-day old 10 ml culture using a bacterial genomic DNA purification kit (Qiagen), as per the manufacturer's instruction. Plasmids were isolated from 5 mL of an overnight culture of E. coli using a plasmid purification kit from New England Biolabs (NEB). Standard procedures were used for the generation of the recombinant plasmid. The QIAquick gel extraction kit (Qiagen) was used to isolate DNA fragments from agarose gels. Substrate ss-DNA (M13mp18, ϕx174) and all enzymes used for genetic engineering were sourced through NEB or Fermentas. The confirmed clones were outsourced to Eurofins Genomics India Pvt. Ltd, Bengaluru for DNA sequencing before purification and characterization of proteins.
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