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1 262 protocols using r statistical software

1

Drought Tolerance Mechanisms in Millet

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Data were analyzed with the R Statistical Software (v4.3.2). Two-way analysis of variance (ANOVA) was done with genotype as the fixed effect and treatments (control, drought acclimation, and non-acclimation) as random factors. The differences between means were assessed using Tukey's multiple range test (P < 0.05), and the results are indicated by different letters above the bars. The correlations between physio-biochemical and molecular indicators of millet shoot and roots were determined with Pearson's correlation matrix, using the R Statistical Software (v4.3.2). Heat maps were generated with TBTools Software (v1.108) (Chen et al. 2020) . The principal component analysis (PCA) was done by using the R Statistical Software (v4.3.2). Each result was summarized by the mean ± standard error (SE) of three independent experiments. Bar graphs were made with the GraphPad Prism software v9.51 (733) and heat maps were made using TBTools Software (v1.108) (Chen et al. 2020) .
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2

Postoperative Complications Analysis

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Data were stratified by age, sex, and comorbidities. Descriptive statistics and complication rates were calculated and analyzed with chi-squared tests (R statistical software, version 3.42, 2017, R Project, Vienna, Austria).
Adjusted multivariate logistic regression models were constructed to identify any associations between postoperative complications and age, gender, and comorbidities. These models were constructed with univariate factors with statistically significant P values of .05 or less (R statistical software, version 3.42, 2017, R Project, Vienna, Austria).
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3

Statistical Analysis of Anthropometric Data

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Statistical analysis was done using STATA (version 15; STATACorp, College Station, TX, USA) and R Statistical Software (version 3.4.3, https://www.r-project.org/). Data visualization was performed using R Statistical Software (version 3.4.3, https://www.r-project.org/). Weight and height measurements were used to calculate the body mass index, and frequency tables were employed to describe distributions of categorical data. For continuous data, median, interquartile range, and 2.5th and 97.5th percentile ranges were calculated. To compare the distributions of the two groups, the Wilcoxon-Mann Whitney test was used.
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4

Pediatric Antibiotic Dosing and Analysis

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Statistical analysis was done using STATA (version 15; STATACorp, College Station, TX, USA), R Statistical Software (version 3.4.3; https://www.r-project.org/), and NONMEM software (version 7.4; Icon Development Solutions, Ellicott City, MD). Data visualization was performed using R Statistical Software (version 3.4.3; https://www.r-project.org/). Age, weight, and height measurements were used to calculate weight-for-age z-score (WAZ), height-for-age z-score (HAZ), and weight-for-height z-score (WHZ) using the WHO Anthro macro for STATA (46 – 48 ). A child was considered underweight, stunted, or wasted if the child had a WAZ of <−2, a HAZ of <−2, or a WHZ of <−2, respectively. CFZ and BDQ doses were summarized as weekly dose to normalize between children requiring different dosing frequencies according to weight. For summary of adverse events, children who received LFX alone were used as the reference since LFX-induced QT prolongation is minimal (49 (link)– (link)52 (link)).
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5

Cross-Cultural Emotional Responses Analysis

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The emotional responses were analyzed using R statistical software (version 3.5.1) (https://www.r-project.org/). In accordance with the first hypothesis, two analyses were conducted wherein both groups were compared for emotional labels and intensity of ratings.
For all analyses, a mean data matrix of dimensions 24 (raga excerpts) X 8 (emotions) were created separately for the two cultures. Each matrix entry was an average of all participant ratings of the group for that particular excerpt and emotion, thus serving as an average of individual rating values.
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6

Statistical Analysis of Experimental Data

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All statistical analyses were conducted using GraphPad Prism v8.0 (GraphPad Software) or R Statistical Software (v4.1 for Windows). The statistical tests are indicated in the Figure legends.
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7

Diagnostic Performance of QFR and QFR-FFR Hybrid

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To compare and assess the diagnostic performance of both QFR and the QFR–FFR hybrid approach, the clinical standard of FFR ≤ 0.80 indicating hemodynamically significant stenosis was applied. The same threshold of ≤ 0.80 was applied for the QFR measurements. For the statistical analyses, the distribution of continuous variables was assessed using histograms and Q–Q plots. Continuous variables were expressed as means and standard deviations (SD) if normally distributed or medians and 25–75% interquartile ranges (IQR) if non-normally distributed. Categorical variables were represented as totals and percentages. Diagnostic performance on a per vessel-basis as sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV) and accuracy were calculated. The variables were calculated as proportions with a 95% confidence interval. The correlation, differences, and diagnostic performance between QFR and wire-based FFR were further assessed using Pearson correlation coefficient, Bland–Altman plots, receiver operating characteristics-curves (ROC-curves) and area under the ROC curve (AUROC-curve). QFR–FFR hybrid approaches using various cut-off points for the intermediate zone in which FFR is measured were simulated. All statistical analyses were performed using R statistical software (www.r-project.org, version 3.6.2).
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8

Assessing Perfusion Heterogeneity Dynamics

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Our primary outcomes of interest were the noise corrected values of total spatial heterogeneity of perfusion (CV2Qtotal) and its components, including the heterogeneity generated by the vertical gradient in perfusion (CV2Qvgrad) and the residual perfusion heterogeneity (CV2Qr) and its length scale components. In secondary analyses, we assessed various regional perfusion and ventilation metrics. We performed two-sided T-tests to evaluate whether there was a difference in means of each metric between study groups and for baseline vs. O2 + iNO within study groups. Additionally, we obtained Cohen’s d effect size estimates for the primary parameters. All analyses were performed using R Statistical Software (v4.1.3) [30 ]. Effect sizes were estimated using the effsize R package (v0.8.1) [31 ]. Statistical significance was set at p < 0.05. Data are presented as mean (range) unless otherwise stated.
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9

Analyzing COPD Exacerbation Patient Data

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Data were analysed in this study using R statistical software (https://www.r-project.org) and EmpowerStats (EmpowerStats.com">http://www.EmpowerStats.com, X&Y Solutions, Inc. Boston MA). Continuous variables are presented as the mean±standard deviation or median (interquartile range, 25th-75th percentile), and categorical variables are presented as numbers and percentages. Statistical differences were determined using the chi-square test, one-way ANOVA, and Kruskal‒Wallis H-test. In addition, a generalized additive model (GAM) was used to analyse the nonlinear relationship between BUN levels and LOS in pneumonic COPD exacerbation patients. A P value <0.05 was considered statistically significant.
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10

Meta-Analysis of Adverse Events

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For each selected clinical trial, the number of subjects who developed the AEs and SAEs, as well as the total number of subjects at risk in the placebo arm or the standard of care arm were extracted. For each anticipated event, incidence rates were calculated using the number of patients with the anticipated events and the total number of the subjects at risk. The frequency and the 95% confidence intervals (CI) were calculated using Clopper–Pearson method for a single proportion. For the AE and SAE identified in more than one trial, we performed a meta-analysis with a random effects model using R statistical software (https://www.R-project.org/) and the “DescTools”, “meta” and “metafor” packages to obtain a summary estimate and 95% confidence interval.
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