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44 protocols using recombinant il 2

1

Intracellular Cytokine Production Assay

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Intracellular cytokine production was assessed as previously described [26 (link)]. Briefly, PBMCs were incubated with specific peptides (SL9 (SLYNTVATL), IL9 (ILKEPVHGV), and TL9 (TLNAWVLVV); 2 μM), respectively, or ovalbumin 257–264 (SIINFEKL; as a negative control), purified anti-CD28 antibody (1 μg/ml; BD Pharmingen, San Jose, CA, USA), and recombinant IL-2 (20 ng/ml; R&D Systems Minneapolis, MN) for 6 hours at 37°C and in the presence of brefeldin A (2 μg/ml; Sigma–Aldrich, St. Louis, MO, USA) for the final 2 hours of incubation. Cells were stained with PE-conjugated tetramer for 20 min at 37°C before staining for surface antibodies. Cell surface staining was completed as described after in vitro activation for 6 hours [27 (link)]. Cells were then permeabilized with Cytofix/Cytoperm™ (BD Pharmingen, San Jose, CA, USA) and labeled with APC-conjugated anti-human IFN-γ (IgG1, B27; eBioscience, San Diego, CA, USA).
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2

T Cell Polarization and Analysis

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105 sort-purified HpTR or nT cells were plated onto tissue culture–treated flat-bottom 96-well plates that were coated with 1 µg/ml CD3 (Bio X Cell) and 10 µg/ml CD28 (Bio X Cell) antibody at 37°C for 2–3 h. For Th2 cell polarizations, cells were cultured with recombinant IL-2 (10 ng/ml; R&D Systems) and/or IL-4 (10 ng/ml or otherwise indicated in Fig. 5; PeproTech). For T reg cell polarizations, cells were cultured with 5 ng/ml recombinant TGFβ (Insight Biotechnology) and 5 ng/ml IL-2 (R&D Systems). At day 3, cells were removed from the plate and transferred to a round-bottom plate and left for an additional 4 d. Cells were harvested at day 7 for FACS analysis.
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3

SARS-CoV-2 Specific T Cell Line Generation

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T cell lines were generated as follows: 20% of PBMCs were pulsed with 10 µg/ml of the overlapping SARS-CoV-2 peptides for 1 h at 37°C, washed, and cocultured with the remaining cells in AIM-V medium (Gibco, Thermo Fisher Scientific) supplemented with 2% AB human serum (Gibco, Thermo Fisher Scientific). T cell lines were cultured for 10 d in the presence of 20 U/ml of recombinant IL-2 (R&D Systems).
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4

Expansion of Primary Human CD8+ T Cells

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PBMCs were derived from samples obtained from healthy volunteers from anonymous buffy coats of healthy donors (Guangzhou Blood Center, Guangzhou, China) by Ficoll-Hypaque gradient separation. Primary human CD8+ T cells were negatively purified with magnetic beads to a purity of >98% from PBMCs with enrichment set DM (BD-IMag). T lymphocytes were activated by anti-CD3 (R&D Systems, Minneapolis, MN, USA) and anti-CD28 at (R&D Systems) Abs 1 μg mL−1 and infected in retronectin-coated plates (Takara Bio, Shiga, Japan). The transduced T cells were expanded in the conditioned medium containing 90% RPMI 1640 (Gibco) supplemented with 10% FBS (Gibco), 0.1 mM nonessential amino acids (Gibco), 2 mM GlutaMAX (Gibco), and 0.05 mM 2-mercaptoethanol at an initial concentration of 1 × 106 cells mL−1. Cells were fed twice per week with recombinant IL-2 (10 ng mL−1) (R&D Systems).
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5

Stimulating PBMC Activation with CpGB and IL-2

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Peripheral blood mononuclear cells (PBMCs) were isolated by density-gradient centrifugation using Ficoll-Paque Plus (Amersham Biosciences, Little Chalfont, UK). PBMCs were washed in phosphate-buffered saline (PBS) and diluted at 4 × 106/mL in complete media. RPMI-1640 was supplemented with 10% FCS (FCS, Hyclone, USA) and dispensed (2 × 106/well) in U-bottom 24-well tissue culture plates (Costar, Corning corporation NY, USA). Wells were stimulated with 3 μg/mL CpGB (CpGB oligonucleotide B, R&D Systems, Minneapolis, MN, USA) ±10 ng/mL recombinant IL-2 (R&D Systems, USA). PBMCs were incubated in 5% CO2 incubator at 37°C for 3 days [25 (link)].
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6

Naive B Cell Activation and Differentiation

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Peripheral blood mononuclear cells were isolated from healthy volunteers, and the naïve B cells were purified by negative selection using magnetic cell separation by using the Naive B Cell Isolation Kit II (Miltenyi Biotec) with anti-CD10 antibodies (Miltenyi Biotec). The purity of the isolated CD19+ CD27− naïve B cell population was routinely >95%. The cells were labeled with 1 μM CFSE (Invitrogen) in serum-free medium at 37 °C for 10 min and washed in complete medium so as to monitor cellular division. Purified naive B cells were cultured at 7.5 × 105 cells/mL in 24-well plates and stimulated during 4 days with 2.6 μg/ml F(ab’)2 fragment goat anti-human IgA+IgG+IgM (H+L) (Jackson ImmunoResearch Laboratories), 100 ng/ml recombinant human soluble CD40L (Millipore), 1.0 mg/ml CpG oligodeoxynucleotide 2006 (Invivogen), and 50 U/ml recombinant IL-2 (R&D Systems). Day 4-activated B cells were washed and cultured at 4 × 105 cells/ml for up to 3 days with 50 U/ml IL-2, 50 ng/ml IL-6, 50 ng/ml IL-10, and 2 ng/ml IL-12 (R&D Systems). At day 7 of culture, cells were washed and cultured with 50 ng/ml IL-6, 10 ng/ml IL-15 and 500U/ml IFN-α for 3 days. The cells were subjected to flow cytometry to analyze cell surface CD38, CD138. QRT-PCR was used to examine the expression of BLIMP1 mRNA and miR-26a.
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7

T Cell Proliferation Assay

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CD4+ and CD8+ T cells were sorted from PBMCs using human anti-CD4-conjugated and human anti-CD8-conjugated microbeads (Miltenyi Biotec, German). To determine the proliferation of T cells, mixed DCs and T cells were continuously cultured for 7 days with 25 U/ml recombinant IL-2 (R&D Systems), which was added on days 3 and 5, [3H]-thymidine was added on day 6, and T cell proliferation was subsequently assessed.
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8

Isolation and Culture of Murine T Lymphocytes

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To isolate lymphocytes, spleens excised from C57BL/6 mice were homogenized with RPMI 1640 medium and filtered through sterile 70 μm cell strainers and then subjected to density gradient centrifugation using Lymphoprep. T lymphocytes were isolated using EasySep™ Mouse T cell isolation kit (STEMCELL) according to manufacturer’s instructions and cultured in RPMI-1640 medium containing 10 % FBS, 1 % penicillin/streptomycin, 50 U/mL recombinant IL-2 (R&D Systems, Minneapolis, MN), 50 µM β-mercaptoethanol (Sigma-Aldrich), 2 mM L-glutamine (Invitrogen, Carlsbad, CA, USA), 1 mM sodium pyruvate (Sigma-Aldrich), 2 µg/mL anti-CD28 (Invitrogen) and 5ug/mL plate-bound anti-CD3 (Invitrogen).
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9

T Cell Proliferation Assay with Polarized Macrophages

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96 well round bottom plates were coated with 1 μg/ml CD3 (145–2C11, BD Biosciences) and 0.5 μg/ml CD28 (37.5, BD Biosciences). Macrophages were M1 (250 ng/ml LPS) or M2 (20 ng/ml IL-4) polarized prior to the experiment for 16 h. CD4+CD25 T cells were stained with CFSE proliferation dye (Thermo) and co-cultured with macrophages at a 1:2 ratio for 4 days in RPMI supplemented with 20 ng/ml recombinant IL-2 (R&D Systems). Upon collection, samples were stained with LIVE/DEAD™ Fixable Near-IR Stain Dye (Thermo) and analyzed by flow cytometry. Proliferation modeling was performed using Flow-Jo 10.1 and results normalized to the T cell only control group.
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10

Expanding Antigen-Specific CD8+ T Cells

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PBMCs were thawed, washed with R10, and treated with 1 mL benzonase (50 U/mL) in R10 for 30 min at 37°C. Cells were cultured for 10 days in the presence of 20 U/mL recombinant IL-2 (R&D systems) to expand antigen-specific CD8+ T cells, as previously described (2 (link)). After 10 days, the cells were restimulated with the corresponding peptides for 6 h, then stained by a panel of antibodies (Table S5) and analyzed using flow cytometry (Details in Supporting information).
Flow cytometry FCS files were analyzed using FlowJo (10.8.1; BD). Antigen-specific cells were denoted by their positivity for IFN-γ, TNFα, CD107A, or CD137. The frequency of HBV-specific CD8+ cells was determined by subtracting the value obtained via peptide-free stimulation (DMSO; background) from that obtained by each antigenic stimulation. After background subtraction, values ≤ 0.5% were considered negative (no response). Polyfunctionality was analyzed using Simplified Presentation of Incredibly Complex Evaluations (SPICE, version 6.1) (17 (link)).
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