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2 protocols using anti cbx4

1

Western Blot Analysis of Protein Expression

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Centrifuged cells or striatum from mice were lysed in radioimmunoprecipitation assay (RIPA) buffer with the addition of protease inhibitor cocktail (Sigma-Aldrich, Cat. No. P83490) buffer, briefly sonicated, and boiled for 5 min at 95°C. 30 μg protein extracts were resolved by 4%–12% SDS-PAGE gels and transferred to 0.2 μM nitrocellulose membrane (Amersham, Cat. No. GEH10600001) for 2 h at 35 V. Membranes were blocked with 5% non-fat dry milk in PBS/0.1% Tween 20 and incubated with the following indicated primary and secondary antibodies: anti-β-actin 1:20,000 (Sigma, Cat. No. A2066), anti-GDNF 1:500 (Santa Cruz Biotechnology, Cat. No. sc-328), anti-TH 1:1,000 (Millipore, Cat. No. AB152), anti-DAD1 1:1,000 (Novus Biologicals, Cat. No. NB600-669), anti-LRRC14 1:1,000 (Novus Biologicals, Cat. No. NBP1-80049), and anti-CBX4 1:500 (Santa Cruz Biotechnology, Cat. No. sc-517216). The antibody against GDNF detects the mature form of GDNF, with an apparent molecular weight of approximately 17 kDa. Proteins of interest were visualized with the Amersham ECL Detection Reagents (GE Healthcare by Sigma, Cat. No. RPN2105). Western blotting images were acquired with Image Quant LAS 4000mini system, and band intensity was calculated using Image Quant TL software.
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2

Investigating EBNA3 Protein Interactions

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Western blots and immunoprecipitations were performed as described previously (12 (link)). Antibodies for western blot were anti-EBNA3A (Abcam, ab16126, 1:1000 dilution), anti-EBNA3B (clone 6C9, Allday lab, E. Kremmer (39 (link)), 1:10 dilution), anti-EBNA3C (clone A10, gift from M. Rowe, University of Birmingham, 1:10 dilution), anti-γ-tubulin (Sigma, T6557, 1:8000 dilution), anti-BMI1 (Millipore, 05–637, 1:1000 dilution), anti-SUZ12 (Santa Cruz Biotechnology, sc-46264, 1:1000 dilution), anti-CBX4 (Santa Cruz, sc-517216, 1:1000 dilution) and anti-MEL18 (Abcam, ab5267, 1:1000 dilution). Antibodies for immunoprecipitations were anti-BMI1 (Bethyl Laboratories, A301-694A, 2 μg) and DYKDDDDK Tag antibody (NEB, 2368, 2 μg). RNA extraction was performed using Qiagen’s RNeasy mini kit, according to the manufacturer’s instructions. cDNA was obtained using Invitrogen’s SuperScript III First Strand Synthesis Supermix. QPCR for cDNA and DNA from ChIP was performed using Platinum SYBR green QPCR Supermix uracil DNA glycosylase (UDG) kit (Invitrogen), as described previously (12 (link)). Primers for STK39 (8 (link)), AICDA (40 (link)) and COBLL1 (10 (link)) loci and expression have been described before. All the oligonucleotide primers used are listed in Supplementary Table S1.
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