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118 protocols using l glutamine

1

Murine Mesenchymal Stem Cell Isolation

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Murine mesenchymal stem cells (mMSCs) were isolated from C57BL/6 mice adipose tissue [61 (link)]. Slices of adipose tissue were washed (0.9% NaCl, PanEco, Moscow, Russia) and digested using 0.4% collagenase (Biolot, Saint Petersburg, Russia) for 1 h at 37 °C with vigorous shaking at 220 rpm. mMSCs were pelleted (1500 rpm, for 5 min), washed (3×; PBS) and maintained using Dulbecco’s modified Eagle’s medium (DMEM, PanEco, Moscow, Russia) supplemented with 10% fetal bovine serum (FBS, HyClone, Utah, UT, USA) and 2 mM L-glutamine (PanEco, Moscow, Russia) at 37 °C with 5% CO2.Human embryonic kidney HEK293T cells and human lung cancer A549 cells were obtained from the American Type Culture Collection (ATCC) and maintained in DMEM (PanEco, Moscow, Russia) supplemented with 10% fetal bovine serum (FBS, HyClone, Utah, USA) and 2 mM L-glutamine (PanEco, Moscow, Russia) at 37 °C with 5% CO2.
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2

Cell Culture Protocols for Cancer and Non-tumor Cell Lines

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PC3, a grade IV adenocarcinoma prostate cell line, A549, a non-small cell lung cancer (NSCLC) cell line and HEK293T, a human embryonic kidney cell line as a non-tumor epithelial cell line, were available from the American Type Culture Collection (ATCC; Rockville, MD, USA). Cells were grown in the standard cell culture medium, Dulbecco’s Modified Eagle’s Medium-F12 (PanEco, Moscow, Russia), supplemented with 10% fetal bovine serum (FBS) (HYCLONE, Logan, UT, USA), 50 U/mL of penicillin and 50 µg/mL of streptomycin (PanEco, Moscow, Russia), 2 mM L-glutamine and 1 mM sodium pyruvate (PanEco, Moscow, Russia). Cells were incubated in a 5% CO2 humidified incubator at 37 °C.
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Glioblastoma Cell Culture Establishment

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Cells were gained from human glioblastoma tissues after tumor resection. Cell culture G01 was chosen for this research as it showed high expression of CD133 cell surface marker. This culture was obtained by washing cells in Versen solution (Paneco), incubation with 0,25 % trypsin-EDTA (Ethylenediaminetetraacetic acid) solution (Gibco) at 37 o C for 40 min and disaggregation from tissue followed by centrifugation at 1000 rpm for 5 min. Cells were cultivated in DMEM/F12 (Dulbecco's Modified Eagle Medium/Nutrient Mixture F-12) medium (Gibco) containing 1% L-glutamine (Paneco) and 10% FBS (Fetal Bovine Serum) (Thermo Scientific) and 1% HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid) (Sigma-Aldrich) at 37°C with a humidified atmosphere of 5% CO2. Passaging was performed at 80% confluency. For passaging cells were washed in PBS (Phosphate Buffered Saline) (1x) (Gibco) and incubated with 0,25 % trypsin-EDTA solution. After trypsin inactivation by fresh medium cells were centrifuged at 1000 rpm for 5 minutes, the supernatant was removed and fresh medium was added, cells were resuspended and plated into cultural flasks. Cell count was defined using trypan blue 1:1.
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4

Culturing Murine Glioma GL261 Cells

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Murine glioma GL261 cells were cultured in DMEM medium (PanEco, Moscow, Russia) supplemented with 4.5 g/L glucose (PanEco, Moscow, Russia), 2 mM L-glutamine (PanEco, Moscow, Russia), 100 μM sodium pyruvate (Thermo Fisher, Waltham, MA, USA), 100 units/mL penicillin (PanEco, Moscow, Russia), 100 μg/L streptomycin (PanEco, Moscow, Russia), and 10% fetal bovine serum (Thermo Fisher, Waltham, MA, USA). At the end of the exponential growth phase, the cells were detached with trypsin-versine solution (1:3), centrifuged at 1000 rpm for 3 min, and reseeded at a density of 5 × 105 cells/mL and a multiplicity of seeding of 1:10. Incubation was maintained at 37 °C under 5% CO2 in humidified air in a Binder C150 incubator (BINDER GmbH, Tuttlingen, Germany). All the experiments were performed after the third passage [21 (link)].
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5

Cultivation of Microparticle-Derived Secretome

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The sterilized rS1/9 microparticles were placed into 24-well plates, and 1 mL of cell culture medium was added to each well. The culture growth medium contained Neurobasal medium A (Gibco, United States) containing 2% serum-free supplement NeuroMax (PanEco, Russia) and 0.5 mM L-glutamine (PanEco). Microparticles were incubated for 1 week at 37°C and 5% CO2. Then, medium with microparticles was transferred to sterile microcentrifuge tubes and centrifuged at 16,000 g for 30 min. The supernatant was collected and used immediately in the tests.
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6

Radachlorin-loaded PLGA Microparticles for Photosensitization

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For preparing RC-containing MPs (RC MPs) as a source of PS was used a concentrate for the infusion solution “RadachlorinÒ” manufactured by RADA-PHARMA (Moscow, Russia), comprising 3.5 mg/mL of a mixture of sodium salts of chlorin e6, chlorin p6 and purpurin 5. Poly(lactic-co-glycolic acid) 65:35 copolymer (PLGA) RESOMER RG 653 H was purchased from Evonik Industries AG (Essen, Germany); span 80, Polysorbate 20, light mineral (paraffin) oil, 1,3-diphenylisobenzofuran (DPBF) were from Sigma (Saint Louis, MO, USA); polyvinyl alcohol 18-88 was from Merck (Darmstadt, Germany); methylcellulose A4M was from Ashland (Covington, KY, USA); DMEM12 medium, penicillin, streptomycin, L-glutamine, 3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) were from PanEco (Moscow, Russia); fetal bovine serum was from Hyclone (Chicago, IL, USA). Methylene chloride, acetonitrile, isopropyl alcohol, n-hexane, n-heptane, as well as the reagents used for preparing buffer solutions, were qualified as chemically pure or pure for analysis and were obtained from Chimmed (Moscow, Russia). Experiments were conducted using purified water obtained by a reverse osmosis UVOI 1812C6 system (MEDIANA FILTER, Moscow, Russia).
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7

Immortalized Cell Line Culture and Treatment

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HaCaT (immortalized non-tumorigenic human keratinocytes) (Table S1), A431 (human epidermoid carcinoma cells), human keratinocytes (passage 2 and passage 3), and HeLa (human adenocarcinoma cells) were kindly provided by the Cell Culture Collection for Biotechnological and Biomedical Research, Koltsov Institute of Developmental Biology, Russian Academy of Sciences. The cells were grown in DMEM (Dulbecco Modified Eagle’s Medium; PanEco, Moscow, Russia) (HaCaT and A431) or DMEM/F-12 (human keratinocytes and HeLa) supplemented with 10% fetal bovine serum (FBS) (HyClone, Logan, UT, USA), 2 mM L-glutamine (PanEco), 80 μg/mL gentamicin (Belmedpreparaty, Minsk, Belarus), and 0.2% Defined Keratinocyte-SFM Growth Supplement (Thermo Fisher Scientific) (only for human keratinocytes) under standard conditions (37 °C, 5% CO2). The cells were collected from the surface of a plastic flask with a 1:3 mixture of trypsin solution (PanEco) and Versene (0.2% EDTA in phosphate buffer) (PanEco) and plated on glass cover slips or on Petri dishes with glass bottom and grown for 48 h. Then, GA or DTT was added, and cells were incubated for 24 h.
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8

Characterization of SARS-CoV-2 Variants

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Specimens of SARS-CoV-2 strains isolated in Vero cells in the Moscow region (Russia) belonging to different lineages, including the variants of concern Delta and Omicron, were used in the study (Table 1). Strain Dubrovka (GenBank ID: MW514307.1) [22 (link)], which is phylogenetically related to the Wuhan-Hu-1 strain (GenBank ID: NC_045512.2), was used for evaluation of immunogenic properties of UV-inactivated virus. All of the viruses (Table 1) were isolated and characterized by the authors of this study.

Characteristics of SARS-CoV-2 specimens used in the study

Strain (isolate)Collection dateGenBank ID of full genome sequencePangolin lineageVariant of concern (WHO)Passage levelTiter, log10 TCID50/ml
Dubrovka2020-06-04MW514307.1B.1.1.317-177.85
Altufjevo2022-01-25ON032859.1B.1.1.529.1.1Omicron55.7
Podolsk2021-10-08ON032860.1B.1.617.2.122Delta96.1
The virus was cultivated on the African green monkey kidney epithelial cell line Vero CCL81 (ATCC) (hereinafter referred to as Vero cells). Vero cells were maintained at 37°C in Earl-buffer-based DMEM medium (PanEco, Russia) in 5% fetal bovine serum (FBS) (Gibco, USA), with L-glutamine (PanEco) (300 µg/ml) and gentamicin (PanEco) (40 µg/ml) in an atmosphere of 5% CO2. The neutralization reaction was performed using Earl-buffer-based DMEM nutrient medium supplemented with 1% FBS, L-glutamine (300 µg/ml), and gentamicin (40 µg/ml).
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9

Isolation and Cultivation of Glioblastoma Cells

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Cells were obtained from human glioblastoma tissues after tumor resection. Cell culture G01 was chosen for this research as it exhibits high expression of the CD133 cell surface marker. This culture was obtained by washing cells in Versen solution (Paneco, Russia), incubation with 0.25% trypsin-EDTA (Ethylenediaminetetraacetic acid) solution (Gibco, UK) at 37°C for 40 min, and disaggregation from tissue followed by centrifugation at 1,000 rpm for 5 min. Cells were cultivated in DMEM/F12 (Dulbecco’s Modified Eagle Medium/Nutrient Mixture F-12) medium (Gibco, UK) containing 1% L-glutamine (Paneco, Russia), 10% FBS (Fetal Bovine Serum) (Thermo Scientific, USA), and 1% HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid) (Sigma-Aldrich, USA) at 37°C with a humidified atmosphere of 5% CO2. Passaging was performed at 80% confluency, for which cells were washed in PBS (Phosphate Buffered Saline) (Gibco, UK) and incubated with a 0.25% trypsin-EDTA solution. After trypsin inactivation by fresh medium, cells were centrifuged at 1,000 rpm for 5 min, the supernatant was removed, fresh medium was added, and the cells were resuspended and plated into cultural flasks. The cell count was defined using Trypan Blue 1:1.
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10

Polyplex Transfection Kinetics in HEK293 and MSCs

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To study polyplex transfection kinetics, human embryonic kidney 293 (HEK293) cells were used. To investigate the transfecting ability of the released polyplexes and the GAS influence on cell osteodifferentiation mesenchymal stem cells (MSCs), derived from rat adipose tissue, 3–4 passages were used [58 ]. Cells were incubated in growth medium: DMEM/F12 (PanEco, Moscow, Russia), 10% fetal bovine serum (FBS, PAA Laboratories, Etobicoke, ON, Canada), 0.584 mg/mL L-glutamine (PanEco, Moscow, Russia), 5000 u/mL streptomycin (PanEco, Moscow, Russia), and 5000 u/mL penicillin (PanEco, Moscow, Russia) in Petri dishes under standard culture conditions (37 °C, 5% CO2).
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