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9 protocols using easyscan pro 6

1

Quantifying Neurodegenerative Pathologies

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Histological slides were scanned at 40× (0.2 µm/pixel) using an EasyScan Pro 6 (Motic, Schertz, TX, USA). Scans were annotated and exported to ObjectiveViewTM (Objective Pathology, CAN). From each scan, five tiff images (1264 × 704 pixels) were exported to FIJI ImageJ VER2.00-rc-69/1.52p (NIH, Bethesda, MD, USA) for analysis of AD pathology, TDP-43 proteinopathy, and MeHg neurotoxicity. To determine the density of NFTs and NPs, a (2 × 5) grid totaling 1 mm2 was applied to cortical layers II and III of the OrL and PL [84 (link)]. The Purkinje cell layer was analyzed for the Cer. ImageJ Cell Counter Ver 2.2.2 (University of Sheffield, England, UK) software was used to enumerate pathological lesions.
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2

Immunohistochemical Analysis of Inflammatory Markers

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For immunohistochemical procedures, spleen sections (n = 3 per group) were air-dried, fixed, heated with citrate buffer (10 mM, pH 6.0) for antigen retrieval, and blocked with 5% normal goat serum (Yeasen, Shanghai, China). Sections were then incubated with anti-p-NFκB (AF2006; 1:100; Affinity, Changzhou, China), anti-iNOS (AF0199; 1:100; Affinity, Changzhou, China), or anti-Cox-2 (AF7003; 1:100; Affinity, Changzhou, China) overnight at 4 °C followed by incubation with HRP conjugated secondary antibody (S0001; 1:200; Affinity, Changzhou, China) for 1 h at room temperature. Then, the target proteins in spleen sections were visualized using a DAB kit (ZSGB-Bio, Beijing, China) and the nuclei were counterstained with hematoxylin (Leagene, Beijing, China). After sealing, the slides were scanned by using a EasyScan Pro 6 (Motic, Xiamen, China).
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3

Immunohistochemical Analysis of Amygdala and Hypothalamus

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The fixed amygdala, and hypothalamus tissues were dehydrated in graded alcohol, cleared in xylene, embedded in paraffin, and sectioned at 5 µm. Tissue sections were stained with haematoxylin and eosin (Ankle and Joshi, 2011 (link)) and cresyl violet. For the immunohistochemical staining, sections of 5 µm thickness obtained from routine paraffin were deparaffinized and subjected to antigen retrieval by heating in a Tris/EDTA buffer (pH 9.0) for 30 mins in a steamer and allowed to cool at room temperature. 0.3% hydrogen peroxide in Phosphate Buffered Saline (PBS, pH 7.4) was used to block endogenous peroxidase activity. Sections were blocked in animal-free serum for 20 mins and later incubated in primary rabbit antibodies: Insulin (ab181547, Abcam, USA; 1/64000 dilution) overnight, followed by Anti-Rabbit HRP (ab97051, Abcam, USA; 1/500 dilution). Counter-stained with haematoxylin. All slides were scanned using Motic Easyscan Pro 6 (TX, USA) at 20X: 0.52 µm/pixel, and 40X: 0.26 µm/pixel with high precision. Motic Easyscan whole-slide images were viewed with Motic VM 3.0 – Motic Digital Slide Assistant.
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4

Adipogenesis and Angiogenesis in Implants

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After fixation in 4% paraformaldehyde for 24–48 h, samples were embedded in paraffin and sectioned. Hematoxylin and eosin (HE) were used to examine the morphology of the implants at each study time point. Immunohistochemical staining was performed for the lipogenic marker Perilipin-1 (Abcam ab3526, Cambridge, UK, 1:1000) and CD31 (Abcam ab28364, Cambridge, UK, 1:4000) was used to locate vascular endothelial cells. Sections were scanned using a microscopic digital slice scanning system (Motic EasyScan Pro 6). Image J software was used to calculate the area proportion of panoramic Perilipin-1-positive adipocytes to assess adipogenesis in implants. The CD31-positive area proportion of 5 random fields of view (×100 magnification) was calculated to assess angiogenesis in the implants in each group.
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5

Immunohistochemical Analysis of Adipose Tissues

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Tissue samples (BAT, iWAT, and eWAT) were fixed in 10% formalin solution (Sigma-Aldrich, #HT501320) for 24–36 h at 4 °C, embedded in paraffin, cut at 5 µm (BAT) and 6 µm (eWAT and iWAT) thick sections, and then stained with hematoxylin and eosin (H&E). For immunohistochemistry, deparaffinization and dehydration of tissue paraffin sections were conducted with xylene and ethanol. Heat-induced antigen retrieval was performed by boiling a section in 10 mM citric acid buffer (pH 6.0) for 15 min at 95–100 °C. Slides were incubated with 3% hydrogen peroxidase to block the endogenous peroxidase activity. After washing with TBS-T buffer, sections were blocked with goat serum (1.5% blocking solution) for 1 h at room temperature followed by incubation with anti-eIF2αSer51 (Cell Signaling Technology, #3398) antibody diluted 1:150 or anti-UCP1 (Abcam, #ab10983) antibody diluted 1:500 at 4 °C overnight. These slides were incubated with biotinylated goat anti-rabbit IgG secondary antibody (Vector Laboratories, #PK-6101) diluted 1 drop (50 μl) to 10 ml blocking solution at room temperature for 1 h. Labeling was then visualized with 3,3’-diaminobenzidine (DAB). Nuclei were stained with hematoxylin. Slides were scanned with a MoticEasyScan Pro 6 (Motic) scanner and scanned images were viewed with Aperio ImageScope software v.12.4.3.5008 (Leica Biosystems).
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6

Adipocyte Regeneration and Angiogenesis

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After the specimens were fixed in 4 % paraformaldehyde for 24–48 h, the tissues were cut at the center of the longest diameter, embedded in paraffin and sectioned. HE was used to evaluate the morphology of the implants at each time point. The lipogenic marker perilipin-1 (Abcam, Cambridge, UK) was stained by immunohistochemistry. CD31 (Abcam, Cambridge, UK) was used to localize vascular endothelial cells. Panoramic scanning of sections was performed with Microdigital section scanning system (Motic EasyScan Pro 6). Image J software was used to calculate the area percentage of panoramic perilipin-1-positive adipocytes to assess in-implant adipocyte regeneration. Adipocytes were randomly selected to measure cell diameter (the longest diameter was calculated for non-circular adipocytes). The area percentage of CD31-positive vessels at 100x was calculated to assess in-implant angiogenesis.
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7

Histological Analysis of Bladder Tissues

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Frozen bladder tissues were sectioned at 8 µm with a cryostat and stained routinely for hematoxylin and eosin (H&E) staining and Masson’s trichrome staining, using the standard protocols. For immunohistochemical staining of caspase-3, the sections were heated in antigen unmasking solution (Vector, Burlingame, CA, USA) according to the manufacturer's instruction. Sections were blocked by 5% bovine serum albumin (BSA) for 30 min before applying the primary antibody against caspase-3 (Novus, Centennial, CO, USA) at 4°C overnight. Protein visualization was achieved by using VisUCyte mouse/rabbit IgG antibody (R&D systems, Minneapolis, MN, USA) and AEC+ substrate chromogen (Dako, Santa Clara, CA, USA). The stained sections were digitally imaged by MoticEasyScan Pro6 (Motic, Hong Kong).
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8

Histological Analysis of AFL and BCC

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For histology of AFL channels, we treated healthy skin with CO2-laser and isolated skin biopsies shortly after. For histology of microscopic BCCs, we isolated samples from non-treated tumor-induced skin. All skin biopsies were put into paraformaldehyde-soaked nylon filters (Leica Biosystems, product number 3801085, Maarn, the Netherlands) to reduce tissue stretching, placed in tissue cassettes, and submerged in stabilized and buffered 4% formaldehyde (VWR Chemicals, catalog number 9713.1000, Leuven, Belgium). Samples were then embedded in paraffin in a Shandon Excelsior ES (Thermo Fisher Scientific, Cheshire, UK) before being cut into 3-µm-thick sections with a RM2255 microtome (RRID:SCR_020229, Leica Biosystems, Nussloch, Germany). Tissue sections were stained with hematoxylin (Merck, mixed by Apoteket RegionH, Copenhagen, Denmark) and eosin (Acros, mixed by Apoteket, Copenhagen, Denmark), and microscopy and digitalization were performed on a Motic EasyScan Pro 6 (Motic, Barcelona, Spain) using a 20× objective.
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9

Histological Analysis of Virus Infection

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After feeding with the MrNV(ΔRdRp)-GFP-containing diet, shrimp were sampled at days 0, 1, 3, 5. and 8 postfeeding and were fixed with Davidson's alcohol–formalin–acetic acid (AFA). In the same way, samples from the injected group and naïve SPF shrimp were sampled and fixed. Fixed samples were then processed for paraffin embedding, microtome sectioned (5 μm thick), and then mounted on glass slides following established protocols (39 ). Slides containing tissue sections were stained with hematoxylin and eosin (H&E), subjected to whole slide imaging using Motic EasyScan Pro 6 using 80× magnification, and then viewed and analyzed using the Motic DS assistant software (Motic VM 3.0). Images of tissue samples were assessed and scanned for signs of infection and typical lesions of muscle necrosis (39 , 40 (link)).
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