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11 protocols using dulbecco modified eagle medium (dmem)

1

SARS-CoV-2 Isolation and Culturing in Vero E6 Cells

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Vero E6 cell lines (African green monkey kidney epithelial cells, ATCC® CRL‐1586™) were cultured in Dulbecco's modified Eagle's medium (DMEM; Bio‐Concept, Salem New Hampshire, USA) supplemented with 10% fetal bovine serum (FBS; Gibco™, Thermo Fisher, Waltham, MA, US). Vero E6 cells were cultured to an optimum monolayer confluence and infected with SARS‐CoV‐2 2019‐nCoV/Italy‐INMI1, the first viral strain isolated in Italy in January 2020 of which the complete sequence was submitted to GenBank (ID: MT066156) and is available on GISAID website (BetaCoV/Italy/INMI1‐isl/2020: EPI_ISL_410545). SARS‐CoV‐2 2019‐nCoV/Italy‐INMI1 was cultured in a DMEM medium supplemented with 5% FBS to a low specific Multiplicity Of Infection (MOI) of 0.05 and incubated at 37°C for 46–50 h in roller bottles (surface of 850 cm2). A single batch virus which was cultured without fetal serum to better analyze the electrophoretic pattern of the proteins was also produced.
SARS‐CoV‐2 isolation and culturing were performed by trained personnel in a Biosafety Level 3 Laboratory (BSL‐3).
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2

Transient Expression of Connexin 32 in HEK293F Cells

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HEK Freestyle 293F (HEK293F; Thermo Fisher Scientific) cells were cultured in 15-cm cell culture dishes containing Dulbecco’s modified Eagle’s medium (DMEM; BioConcept) supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin (PenStrep; PAN Biotech) with 5% CO2 and cultured at 37°C. At 80% confluence, cell medium was exchanged to DMEM supplemented with 2% FBS and 1% PenStrep. The transfection mixture was prepared with Cx32-YFP-twinStrep plasmid and branched polyethyleneimine (Sigma-Aldrich) at a ratio of 1:2 (w/w) with serum-free DMEM. The transfection mixture was added to cells after 5 min of incubation at room temperature. After 48 hours of expression at 37°C and 5% CO2, the cells were harvested using a cell scraper in buffer A containing 25 mM tris-HCl (pH 8.0) and 150 mM NaCl and collected by centrifugation at 800g and 4°C. The cells were washed with buffer A and collected by centrifugation. The supernatant was discarded, and the cells were frozen at −80°C for further experiments.
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3

Differentiation and Immortalization of Primary Mouse Macrophages

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Primary mouse macrophages (BMDMs) were differentiated for 6 d and cultured for up to 9 d in DMEM (Gibco) supplemented with 10% FCS (Bioconcept), 20% 3T3 supernatant (MCSF), 10% Hepes (Gibco), and 10% nonessential amino acids (Gibco). Immortalization of macrophages was performed as previously described (Blasi et al, 1985 (link); Broz et al, 2010 (link)). Immortalized macrophages (iBMDMs) were cultured in DMEM complemented with 10% FCS (Bioconcept), 10% MCSF (3T3 supernatant), 10% Hepes (Amimed), and 10% nonessential amino acids (Life Technologies). To passage the BMDMs and iBMDMs, the cells were washed with PBS and left to detach at 4°C for 15 min and scarped using cell scrapers (Sarstedt), spun down at 300g for 5 min at 4°C, and resuspended in the appropriate amount of medium.
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4

Cell Culture and Characterization of Human Osteosarcoma and Retinal Pigment Epithelial Cell Lines

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The human osteosarcoma cell line MG-63 (CRL-1427) and human retinal pigment epithelial cell line ARPE-19 (CRL-2302), which were used as control, were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). The cell lines used were accompanied by identification test certificates and were grown according to corresponding tissue culture collection protocols. The ARPE-19 cells were grown in Dulbecco’s minimal essential medium (DMEM)/F12 and MG-63 were grown in DMEM supplemented with 10% Fetal calf serum (FCS) and 1% Penicillin-Streptomycin Solution at 37 °C, 5% CO2 and 100% humidity. The FCS, DMEM and Trypsin EDTA solution were from Bioconcept (Allschwil, Switzerland). All other chemicals employed in this study were from Merck (Buchs, Switzerland) and of the highest grade of purity. All the cell culture experiments were performed in TPP plastic ware (Trasadingen, Switzerland).
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5

Culturing Endothelial and Kidney Cells

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Porcine aortic endothelial cells overexpressing VEGFR-2 (PAE-KDR) and human embryonic kidney epithelial 293 cells (HEK293) were cultured as monolayers in Dulbecco’s modified Eagle’s medium (DMEM; BioConcept, Basel, Switzerland) enriched with 10% fetal bovine serum (FBS) and 1% penicillin streptomycin. Human umbilical vein endothelial cells (HUVECs; Lonza, Walkersville, MD, USA) were cultured in EGM-2 medium (Lonza). Cells were grown in humidified incubator at 37 °C and exposed to 5% CO2.
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6

MIA PaCa-2 Cell Culture Protocol

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The human pancreatic adenocarcinoma (PA) cell line MIA PaCa-225 (link) was obtained from BCRC (Bioresource Collection and Research Center, Taiwan; Derived from ATCC; ATCC number: CRL-1420) and was cultured in Dulbecco’s modified Eagle’s medium (DMEM, BioConcept, Amimed, Allschwil, Switzerland) supplemented with 10% fetal bovine serum (Hyclone, Logan, UT, USA) and 2.5% horse serum (Thermo Fisher Scientific, Waltham, MA, USA) at 37 °C in a humidified 5% CO2 chamber.
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7

Mammalian Cell Membrane Protein Purification

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All chemicals used in buffer preparations were from Gerbu, except imidazole, which was from Merck. LB broth for small-scale bacterial cultures was from Conda. Mammalian cell culture media, DMEM and PEM, were from BioConcept and Thermo Fischer Scientific, respectively. Fetal Calf Serum was purchased from Seraglob. Penicillin-streptomycin-amphotericin B (PSA) and Glutamax were from Gibco. Detergents, including dodecylmaltoside (DDM), decyl maltoside (DM), lauryldimethylamine oxide (LDAO), C12E8, octyl glucoside (OG), nonyl glucoside (NG), octyl maltoside (OM), nonyl maltoside (NM) and octyl thioglucopyranoside (OTG) were purchased from Anatrace (all detergents were ana-grade; DDM used for solubilisation was sol-grade). HisPur Cobalt resin and StrepTactinXT Superflow resin were purchased from Thermo Fischer Scientific and iba, respectively. Cholesteryl hemisuccinate, 25 kDa branched PEI, sodium butyrate and tetracycline were from Sigma. Biotin was purchased from Fluorochem. Radioligand [3H]PK11195 was from PerkinElmer.
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8

Culturing Prostate Cancer Cell Lines

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Prostate cancer cells (LNCaP and VCaP) were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA). C4-2 cells were a generous gift from Prof. Dr. med. George N. Thalmann (University Hospital Bern, Bern, Switzerland). Both LNCaP and C4-2 cell lines were cultured in RPMI Medium 1640 (1×) [+] L-Glutamine (Gibco, Reinach, Switzerland) supplemented with 10% FBS and 1% penicillin/streptomycin (P/S). VCaP cells are derived from a vertebral metastatic prostate cancer lesion [24 (link)] and were grown in DMEM (BioConcept) High Glucose (4.5 g/L) with stable glutamine and sodium pyruvate, supplemented with 10% FBS and 1% penicillin/streptomycin (P/S). PNT1A epithelial cells were a generous gift from Pirkko Härkönen (Institute of Biomedicine, University of Turku, Finnland). As PSMA/AR are not expressed in PNT1A cells, these cells were used as negative controls when PSMA status was explored. All cells were incubated at 37 °C with 5% CO2. Cells were not used for longer than 10 passages. Medium was changed twice a week.
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9

Culturing Human Gingival Fibroblasts

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HGF-1 cells were purchased from ATCC (CRL-2014) and grown in Dulbecco’s minimal essential medium (DMEM) supplemented with 10% fetal calf serum (FCS) and 1% penicillin-streptomycin solution at 37 °C, 5% CO2, and 100% humidity, according to the corresponding tissue culture collection protocol. For all experiments, HGFs were used during passages 3–8. FCS, DMEM, and trypsin EDTA solution were obtained from Bioconcept™ (Allschwil, Switzerland). All other chemicals employed in this study were from Merck™ (Buchs, Switzerland) and of the highest purity grade. All cell culture experiments were performed using TPP® (Trasalingen™, Switzerland) plasticware.
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10

Vero E6 Cell Line Cultivation

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The cell line VERO E6 (ATCC—CRL 1586; kidney from the African green monkey Cercopithecus aethiops) was obtained from American Type Culture Collection (Manassas, Virginia USA). Cells were grown in Dulbecco's modified Eagle's medium (DMEM Bio-Concept, Salem New Hampshire, USA) containing 10% fetal bovine serum (FBS; Gibco™, Thermo Fisher, Waltham, MA, US); 96-well plates were used for titration and neutralization tests.
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