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56 protocols using db 5ms fused silica capillary column

1

Comprehensive Lipid Biomarker Extraction and Analysis

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Around 100–200g dried and crushed samples (<100 mesh) were Soxhlet extracted for 72 h by the solvent mixture of dichloromethane (DCM) and methanol (93:7, v:v). After removing the solvents and asphaltenes by n-hexane, the resultant soluble fraction was separated into aliphatic hydrocarbons, aromatic hydrocarbons, and polar compounds by using the column chromatography method (alumina/silica gel column). Aliphatic hydrocarbons, aromatic hydrocarbons, and nonhydrocarbons were extracted by washing with n-hexane, dichloromethane, and methanol, respectively.
Aliphatic hydrocarbons were analyzed using a Gas Chromatography–Quadrupole Mass Spectrometer (GC–MS) 6890N/5973N (Agilent Technologies, Palo Alto, CA, USA), which was fitted with a DB-5 MS fused silica capillary column (J&W Scientific, Agilent, USA; 30 m × 0.25 mm × 0.25 µm). The GC oven temperature was initially set at 80 °C (hold for 5 min), then programmed to 290 °C (hold for 40 min) at a rate of 4 °C/min. The compounds were identified by comparing their mass spectra with those in the NIST02 library and published data.
The biomarker experiments were conducted in the sample pretreatment laboratory of the Key Laboratory of Petroleum Resource Research, Northwest Institute of Eco-Environment & Resources, Chinese Academy of Sciences.
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2

Quantification of Hydrocarbon Compounds in Water Samples

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A sample of the water column was taken for WAF and CEWAF at the beginning (0 h) and at the end (96 h) of the experiment. Total hydrocarbons, aliphatic (C10 - C40) and PAHs, including 16 US EPA priority PAHs were quantified in WAF and CEWAF following the method of Wang et al. (48 (link)). Prior to extraction, samples were enriched with 100 μl of the following standards: biphenyl d10, phenanthrene d10, chrysene d12, benzo(a)pyrene d12 (10 mg/mL), and o-terphenil (200 mg/mL). In each set of samples, a technical blank and a duplicate sample were added. Identification and quantification of the compounds was carried out with standards from Ultra Scientific® in the case of the PAHs and from Chiron© for deuterated PAHs. Total hydrocarbons were analyzed with an Agilent 7890A© gas chromatograph equipped with an FID detector. PAHs were analyzed with a Perkin-Elmer© gas chromatograph equipped with a Clarus 500® mass-selective detector using a 30 m × 0.25 mm (i.d.) x 0.25 DB-5 MS fused silica capillary column (J & W Scientific©), operating in the selected ion monitoring (SIM) mode, calibrations were verified daily, and the calibration curves were carried out for each set of samples.
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3

GC-MS Analysis of Fatty Acids

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GC–MS analysis was performed on an Agilent 7890/5975C GC–MS (Agilent Technologies, Santa Clara, CA, USA). FAs were separated using a 30 m × 0.25 mm × 0.25 μm DB-5 MS fused silica capillary column (J&W Scientific, Folsom, CA, USA). The sample injection volume was 1 μL with a split ratio of 10:1. Helium (99.9996%) was used as the carrier gas and the flow rate was 1.2 mL/min. The injector and transfer line temperatures were both 280°C. The oven temperature program was: 60°C for 1 min, then ramped to 200°C at 20°C/min, and held for 3 min; later, ramped to 280°C at 5°C/min, and held for 5 min. The metabolic data were collected at the mass scan range from 50 to 500 amu after a solvent delay of 3.5 min. All samples were analyzed in a random order.
In order to monitor the repeatability of sample analysis, quality control (QC) samples were added into the analysis sequence for every 3 samples. QC samples were prepared by equally mixing the tested serum samples, and processed together with samples.
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4

GC-MS Analysis of Gout and Volunteer Samples

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GC–MS analysis was performed on an Agilent 7890/5975C GC–MS system with a 30 m 0.25 mm 0.25 μm DB5-MS fused silica capillary column (J&W Scientific, Folsom, CA, USA). High-purity helium (99.9996%) was used as the carrier gas at a constant flow rate of 1.2 mL/min. The sample injection volume was 1 μL, and the split ratio was 10 : 1. The injection temperature was 300°C, and the transfer line temperature was maintained at 280°C. The column temperature was initially set at 70°C for 3 min and then increased to 300°C at 5°C/min and held for 5 min. The mass scan was set from 33 to 600 with a scan speed of 2 scans/s. The solvent cut time was 4.8 min. The analysis order of the gout and volunteer samples was random, and the QC sample was injected every 7 samples within a batch.
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5

GC-MS Analysis of Plant Extract

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The plant extract was subjected
to GC–MS analysis using a gas chromatography instrument (GC
7890A) coupled with MS (5977B, with single quadrupole) (Agilent, USA).
Separation was performed using a 0.25 μm DB-5MS fused-silica
capillary column (0.25 mm in diameter) (J&W Scientific, Folsom,
CA). The mass spectrum was scanned (at a rate of 1.5 scans/s) from m/z 35 to 650, peaks were identified using
the MassHunter library, and the peak area (%) was used for quantification.
The MS source temperature was 230 °C, while the Quadrupole MS
temperature was 150 °C. Helium gas was used as a carrier with
a flow rate of 1 mL/min. For sample preparation, water contents were
removed from the sample in a drying oven, and the semisolid sample
was dissolved in methanol before injecting into the GC–MS instrument.
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6

GC-MS Analysis of Organic Compounds

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The GC-MS experiment was performed using a QP 2010Plus GC-MS system equipped with an AOC-20i auto-sampler (Shimadzu, Kyoto, Japan). The system utilized a DB-5 ms fused-silica capillary column (30 m × 250 μm × 0.25 μm, J&W Scientific, Folsom, CA). The interface and ion source temperatures were set to 320 °C and 230 °C, respectively. High-purity helium was used as the carrier gas at a constant linear velocity of 40.0 cm/s. The initial oven temperature was 80 °C for 1 min, ramped to 210 °C at 30 °C/min, increased to 320 °C at 20 °C/min, and maintained for 4 min. An electron ionization source was used, and the ionization voltage was set to 70 eV. The mass scan range was 33–600 m/z, and the solvent delay was 2.92 min.
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7

GC-MS Analysis of Polycyclic Aromatic Hydrocarbons

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PAHs were analyzed on a Hewlett-Packard 6890 gas chromatograph (GC) coupled with a Hewlett-Packard 5973 mass selective detector. A laboratory reference sample (diluted oil sample) was analyzed with each batch of samples to confirm GC/MS/SIM system performance and calibration. Instrumental calibrations were checked by injection of a mid-level calibration solution. Separation of PAHs was accomplished with a DB-5 MS fused silica capillary column (30 m×0.25 mm i.d., 0.25 μm film thickness, J&W Scientific). The oven temperature was programmed to increase from an initial temperature of 60°C to 150°C at 15°C min-1, then 5°C min−1 to 220°C, and finally at 10°C min−1 to a final temperature of 300°C with a final holding time of 10 min. The PAHs were identified based on the comparison of the retention time and mass spectrum of selected ions with the calibration standards. Alkylated PAH were quantitated based response of the parent PAH compound (e.g. naphthalene response factor was used to determine naphthalene with 1–4 substituted carbons).
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8

Quantification of Superficial Citral in Microparticles

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To determine the superficial content of citral ( SCCt ), 0.2 g of microparticles (Mp) were weighed, and 2 mL of hexane was added. The mixture was then manually shaken with three inversion movements and centrifuged at 2,000 rpm for 1 minute. Finally, the supernatants were transferred to 2 mL amber vials for analysis by GC[22] (link), [23] (link).
The GC analysis was performed following the methodology proposed by [14] (link) in a gas chromatograph (7890A, Agilent Technologies, USA) equipped with a DB-5MS fused silica capillary column (30 m x 0.25 mm x 0.25 μm film, J & W Scientific, USA) and a flame ionization detector (FID). The carrier gas was nitrogen at a flow rate of 1.11 mL/min. The injected sample volume was 1 μL. The column temperature was initially set to 60 °C for 5 min and then heated to 120 °C at a rate of 5 °C/min and finally, to 250 °C at a rate of 10 °C/min.
The quantification of SCCt was performed using a calibration curve (1 - 2,000 μg/mL , R2 = 0.999) calculated according to Eq. (3)[8] . SCCt=CCStWMp where SCCt is the superficial content of citral (mg Ct/g Mp); St is solvent; Mp are the microparticles; CC is the concentration of superficial citral in solvent (mg Ct/2 mL hexane); and W is the weight (g).
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9

Sensitive GC-MS/MS Analysis of OCPs

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Mass spectrometry analyses were performed with an Agilent 7010 GC/MS instrument (Palo Alto, CA, USA) equipped with a DB-5MS fused-silica capillary column (30 m × 0.25 mmI.D., film thickness 0.25 µm; J&W Scientific). Helium was used as the carrier gas at a flow rate of 1.0 mL/min. A 1-µL sample was introduced by split-mode injection (split ratio 10:1).
Triple quadrupole GC /MS is the most sensitive GC/MS/ MS system with the lowest, 0.5 fg. The mass spectrometer was run in electron ionization (EI) mode with an electron energy of 70 eV, scanning a range of 50-550 amu. The manifold temperature was kept at 230 • C. For sample monitoring and confirmation analysis, SIM mode was used with a dwell time of 50 ms for each ion. All OCPs were identified by retention time and specific ions. They were quantified by comparison to the internal standard.
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10

Amino Acid Analysis of Stratified Seeds

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Seeds that had been stratified for 3-d were incubated at 22 °C for 0 h or 24 h and collected for analysis. The amino acid contents were measured by OE BioTech (Shanghai, China) according to standard procedures for GC-MS. All chemicals and solvents used were of analytical grade. The analyses were carried out on a GC-MS system (Agilent, model 7890B) coupled with a mass-selective detector (Agilent, model 5977A). A DB-5MS fused-silica capillary column (30 m×0.25 mm×0.25 μm; Agilent J & W Scientific) was used to separate the derivatives. The analysis was performed under the following settings: Helium (>99.999%) was used as the carrier gas at a constant flow rate of 1 ml min–1 through the column; the injector temperature was maintained at 260 °C; the injection volume was 1 μl by splitless mode and the solvent delay time was set to 5 min; the initial oven temperature was 60 °C, ramped to 125 °C at a rate of 15 °C min–1, to 210 °C at a rate of 5 °C min–1, to 270 °C at a rate of 10 °C min–1, to 305 °C at a rate of 20 °C min–1, and finally held at 305 °C for 5 min; the temperatures of the MS quadrupole and electron impact ion source were set to 150 °C and 230 °C, respectively; and the collision energy was 70 eV. Mass spectrometric data were acquired in full-scan mode (m/z 50–500).
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