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25 protocols using caspase 1

1

Immunofluorescence Analysis of LG Inflammasome Pathways

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The paraffin sections of LGs (4 µm) were stained with H&E and subsequently observed with a microscope. The LG cryosections or primary LG epithelial cells were fixed with 4% paraformaldehyde (Solarbio, Wuhan, China). The LG cryosections were incubated with NLRP3 (1:200; Affinity Biosciences, Cincinnati, OH, USA), caspase-1 (1:200; ABclonal, Wuhan, China), and GSDMD (1:200; Affinity Biosciences), and the primary LG epithelial cells were incubated with AQP5 (1:200; Abcam, Cambridge, MA, USA), epithelial cell adhesion molecule (1:200; Affinity Biosciences,), NLRP3 (1:200; Affinity Biosciences), caspase-1 (1:200; ABclonal), and GSDMD (1:200; Affinity Biosciences), followed by fluorescein-conjugated secondary antibodies (1:200; Life Technologies, Grand Island, NY). The cryosections were visualized using a fluorescence microscope (Olympus, Tokyo, Japan).
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2

Ferulic Acid Modulates Inflammatory Response

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RPMI-1640 culture medium and foetal bovine serum were obtained from Gibco. Ferulic acid (FA), lipopolysaccharide (LPS), Phorbol-12-myristate-13-acetate (PMA), thiazolyl blue tetrazolium bromide (MTT), and 3-methyladenine (3-MA) were purchased from Sigma-Aldrich. MCC950 was purchased from Abmole Bioscience Inc. DCFH-DA was purchased from Beyotime Biotechnology Co., Ltd. The reverse transcription kits and SYBR Premix Ex Taq were purchased from Takara Biomedical Technology. The antibodies against Microtubule Associated Protein 1 Light Chain 3 Beta (LC3), Sequestosome 1 (p62), Beclin-1, NLRP3, pro-caspase-1, caspase-1, pro-Interleukin 1 Beta (IL-1β), IL-1β and Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) were purchased from ABclonal Technology. The Human IL-6 ELISA Kit, Human IL-1β ELISA kit and human TNF-α ELISA Kit were purchased from Multisciences (Lianke) Biotech, Co., Ltd. All other reagents used were obtained from local commercial sources.
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3

Vulvar Tissue Protein Analysis

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The vulvar tissues were homogenized in RIPA lysis buffer with protease inhibitors. The concentration of total protein was determined using the BCA kit (Servicebio, Wuhan, China). The equal amounts of denatured proteins were separated by 10% SDS-PAGE and transferred to a polyvinylidene fluoride membrane (Merck Millipore, Billerica, MA). The membrane was sealed in skim milk and then incubated with primary antibodies against NLR family pyrin domain containing 3 (NLRP3), interferon gamma inducible protein 16 (IFI16), caspase-1 (ABclonal, Wuhan, China), ASC (Santa Cruz Biotechnology, Dallas, TX), gasdermin D (GSDMD)(CST, Danvers, MA) and secondary antibody (LI-COR, Lincoln, NE). Images of the membrane were acquired using the Odyssey infra-red imaging system (LI-COR, Lincoln, NE).
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4

Investigating SETDB1-p53 Apoptosis Pathway

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CRC cells were lysed with radio immunoprecipitation assay (RIPA) lysis buffer (keyGen, China), containing protease inhibitor cocktail (Roche Life Science, Switzerland). Protein concentration was determined using the BCA Protein Assay Kit (keyGen bioTech, China). Western blotting was performed with specific primary antibody against SETDB1 (1:1000, Cell Signaling Technology), TP53 (1:1000, Abclonal), Caspase3 (1:1000, Abclonal), BAX (1:1000, Abclonal), Caspase1 (1:1000, Abclonal). The housekeeping gene a-tubulin (1:1000, Proteintech) was used as the loading control.
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5

Immunofluorescence Analysis of NLRP3, GSDMD, and ZO-1 in RIMVECs

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The sterilized coverslips were placed into the wells of a 24-well plate, and then RIMVECs were added to each plate at the concentration of 1 × 105 cells/well in 600 μL DMEM. When the cells reached 90% confluence onto the coverslip, they were divided into the same groups as described in the in vitro experiment paragraph. At the end of the incubation time, the cells were fixed with 500 μL paraformaldehyde (PFA) for 40 min, followed by permeabilization with 0.2–0.5% Triton X-100 for 20 min. The cells were washed three times with phosphate buffered saline (PBS) before and after each step and then incubated with the following primary antibodies at 4°C overnight: NLRP3 (1:1000, ABclonal), GSDMD (1:1000, ABclonal), caspase-1 (1:1000, ABclonal), and ZO-1 (1:1000, Affinity Biosciences). Next, the secondary antibody (1:5000 dilution in 5% BSA, ABclonal) was added, and the cells were incubated at room temperature for 1 h in the dark. One μg/mL 4’,6-diamidino-2-phenylindole (DAPI) was added to each well, and the cells were incubated at room temperature for 20 min in the dark. After washing, the coverslips were removed from the wells and blotted to remove any excess water. Each coverslip was placed onto a microscope slide, and the slides were sealed with nail polish and observed under a confocal fluorescence microscope (NIKON Ti-S, Tokyo, Japan).
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6

Immunofluorescence Analysis of NLRP3 and Caspase-1 in HG-Induced NRK-52E Cells

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The expression of proteins, including NLRP3 and caspase-1 in HG-induced NRK-52E cells, was assessed through immunofluorescence analysis [15 (link)]. Cells grown on a coverslip fixed in a 6-well plate were simultaneously incubated with BCA (5 μM, 10 μM, and 20 μM) and HG (30 mmol/L) in serum-free media. After 48 h of incubation, cells were treated with paraformaldehyde (4%), followed by permeabilization (Triton X-100 0.2%), and blocking with normal goat serum (5%). The cells were then washed and probed with primary antibodies NLRP3 (1:150 dilution, ABclonal Inc., Woburn, MA, USA) and caspase-1 (1:150 dilution, ABclonal Inc., Woburn, MA, USA), followed by washing and incubation with Alexa fluor 488 or 594 labelled anti-rabbit secondary antibody (Invitrogen, Waltham, MA, USA) at room temperature for 1 h. The nuclear stain was undertaken through DAPI stain (ThermoFisher Scientific, Waltham, MA, USA). The cells were visualized under a confocal microscope (Leica TCS SP8).
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7

TXNIP and NLRP3 Inflammasome Pathway

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Protein from pancreatic tissue and INS-1 cells lysates were collected. Western blot procedures were processed as standard protocol with specific antibodies against TXNIP (1:1,000, Abcam, UK), GSDMD (1:1,000, Abclonal, USA), caspase-1 (1:1,000, Abclonal, USA), NLRP3 (1:1,000, Adipogen, USA), and β-actin (1:5,000, Sigma, USA). The blots were visualized by ChemiDoc™ Touch Imaging System (Bio-Rad, CA, USA). Western blot image was analyzed and quantified by using Image J software (NIH, Bethesda, MD, USA). Relative expression of the protein was normalized with β-actin expression.
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8

Renal Cell Culture and Urate Metabolism

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Cell culture medium and human primary renal PTECs were provided by ScienCell (San Diego, CA, United States). Anti-SLC2A9 (URAT1) antibodies, TSG101, CD63, caspase-1, GSDMD, IL-1β, caspase-3, caspase-8, caspase-9, cytochrome c, Bcl-2, and Bax were purchased from ABclonal (Wuhan, China). Oxonic acid (OA) and UA were provided by Sigma (St. Louis, MO, United States). CIAS1/NALP3, GAPDH, and anti-GLUT9 were provided by Abcam (Cambridge, United Kingdom). In addition, the CCK-8 assay kit was provided by Jiwei Biological Technology (Shanghai, China).
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9

Western Blot Analysis of Cardiac Proteins

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Heart tissues were lysed in radioimmunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China) containing protease and phosphatase inhibitors. The protein concentrations were determined using the BCA assay (CWBiotech, Beijing, China); 40 μg of total proteins were loaded per lane, separated using 10% sodium dodecyl sulfate (SDS-PAGE), and blotted onto nitrocellulose membranes. The membrane was incubated overnight with the following primary antibodies: AMPK, p-AMPK, Atg5 and BECN1 (1:1,000, Cell Signaling Technology, USA), Bcl-2, Bax, caspase-3 and β-actin (1:1,000, Proteintech, China), IL-1β, mTOR, and p-mTOR (1:1,000, Abcam, UK), NLRP3, ASC and caspase-1 (1:1,000, Abclonal, China). The membranes were washed and incubated with the corresponding secondary antibodies. Finally, the bands were visualized using an ECL Kit (CW0049, CWBIO, Beijing, China).
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10

Comprehensive Western Blot Analysis

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Western blot analysis was performed according to a previously described standard method23 (link). Primary antibodies against the following targets were used for the Western blot analyses: HER2 (#2165, diluted at 1: 500, Cell Signaling Technology), Cyclin B1 (#4138, 1: 1000, Cell Signaling Technology), Cyclin D1 (#2922, 1: 1000, Cell Signaling Technology), HMGB1 (ab79823, 1: 10000, Abcam), GSDMB (A7474, 1: 1000, ABclonal), caspase-1 (A18646, 1: 1000, ABclonal), NLRP3 (A12694, 1: 1000, ABclonal), ERK (#9102, 1: 1000, Cell Signaling Technology), phosphorylated (p)-ERK (#4370, 1: 1000, Cell Signaling Technology), AKT (#9272, 1: 1000, Cell Signaling Technology), phosphorylated (p)-AKT (#4060, diluted at 1: 1000, Cell Signaling Technology), Nrf2 (#12721, 1: 1000, Cell Signaling Technology), β-actin (used as the loading control; sc-47778, Santa Cruz Biotechnology), GAPDH (used as the loading control; sc-47724, Santa Cruz Biotechnology), and β-tubulin (used as the loading control; #2128, Cell Signaling Technology).
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