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13 protocols using reagent diluent

1

Quantifying Human Tau Transgene Expression

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Brains and spinal cords were homogenised in 2 ml/g buffer [25 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 5 mM sodium pyrophosphate, 10 mM β-glycerophosphate, 30 mM sodium fluoride, 10 mM sodium vanadate, 10 mM PMSF and one tablet of complete protease inhibitor cocktail (Roche) per 20 ml buffer], followed by a 30 min centrifugation at 150,000 g. The supernatants from at least three mice per group were diluted 1:150 (30–60 ng protein/ml) in reagent diluent (R&D Systems) and incubated overnight at 4 °C in 96-well ELISA plates, which were blocked with phosphate-buffered saline (PBS) containing 0.2% Tween-20 and 3% bovine serum albumin (BSA) for 1 h at 37 °C. To assess human Tau transgene expression levels, the supernatants were then incubated with human-specific [27 ] anti-Tau antibody HT7 (1:6,000, Fisher Scientific) for 2 h, followed by horseradish peroxidase-conjugated anti-mouse antibody (1:50,000, Bio-Rad) for 1 h. Following a colorimetric reaction, the plates were read on a Tecan plate reader. Purified recombinant Tau and brain lysates of heterozygous mice transgenic for human mutant P301S Tau were used as standards.
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2

VEGF and VEGFR Binding Assay

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A 96-well flat bottom dish (#3370; Corning, Corning, NY) was coated with protein (1 μg/well) in 50 µl blocking buffer (Reagent Diluent, DY995; R& D Systems) and incubated overnight at 4 °C. After blocking with 200 μl blocking buffer for 1 hour, 100 μl of the secondary protein in PBS (VEGF 500 pg/well, VEGFR1 and VEGFR2 10 ng/well) was added to each well and incubated for 3 hours. A primary antibody to detect the second protein was applied with 100 μl blocking buffer and incubated for 1 hour. The secondary HRP-conjugated antibody was applied with 100 μl blocking buffer and incubated for 1 hour. 100 µl of Streptavidin-HRO working dilution (TMB substrate, Sigma-Aldrich) was added and incubated for 20 minutes. Finally, 50 μl of stop solution (2 N H2SO4; MG Scientific Inc., Pleasant Prairie, WI) was added and absorbance was measured at 540 nm. Plates were washed three times with 300 μl T-PBS between each step.
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3

Quantification of Synovial Fluid Biomarkers

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Synovial fluid sAxl (DY154), sMer (DY6488), sTyro3 (DY859), and Gas6 (DY885B) concentrations were determined using the DuoSet sandwich ELISA kits purchased from R&D Systems (Minneapolis, MN, USA). All ELISAs were performed according to the manufacturer's instructions using the DuoSet ELISA Ancillary Reagent Kit 2 (DY008; R&D Systems). In case of detection of sAxl and Gas6, synovial fluid samples were diluted 30 times, whereas for the detection of sMer and sTyro3, samples were diluted 10 and 5 times, respectively. Synovial fluid samples were diluted in Reagent Diluent (DY995; R&D Systems). Absorbance at 450 nm with a correction wavelength of 540 nm was detected using a microplate reader (CLARIOstar, BMG LABTECH).
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4

Quantifying HA Secretion in 4T1 Cells

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4T1 murine breast carcinoma cells were seeded in 96 well cell culture plates (Corning Costar) at 5,000 cells per well. Cells were cultured in RPMI 1640 media supplemented with 10% fetal bovine serum. MU was solubilized in dimethyl sulfoxide (DMSO), diluted into RPMI 1640 media supplemented with insulin, transferrin, and sodium selenite (ITS, Sigma)), and added to cells. MU-P was solubilized directly into RPMI-ITS and added to cells. Twenty-four hours after plating, cells were washed 3x with phosphate buffered saline (2.7mM KCl, 1.5mM KH2PO4, 136.9mM NaCl, 8.9mM Na2HPO4, pH 7.4; PBS). MU and MU-P were added to cells after washing with or without Phosphatase Inhibitor Cocktail 2 (Sigma). Forty-eight hours later, 50 μL of media was removed and frozen. Fifteen μL of alamarBlue (Life Technologies) was added to cell media and incubated for 3 hours. Cell number was quantified by measuring alamarBlue fluorescence at 585 nm after excitation at 570 nm using a Tecan Infinite 4300 (Tecan Group Ltd).
HA levels in culture media were quantified by using the HA DuoSet ELISA assay (R&D Systems). Frozen media samples were thawed and diluted 1:100 in Reagent Diluent (R&D Systems). The ELISA was run according to the manufacturer’s specifications. Total HA in culture media was normalized to cell number using the alamarBlue assay and to DMSO control wells.
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5

Quantification of Recombinant Murine GM-CSF

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Recombinant murine GM-CSF concentration was quantified using an enzyme-linked immunosorbent assay (ELISA) according to the manufacturer’s instructions (R&D Systems). This assay was implemented due to the high specificity for GM-CSF to allow for accurate detection and quantification. The concentration of kit standards used to generate a calibration curve for GM-CSF range from 7.8-500 pg/mL GM-CSF, which defines the limits of detection of the ELISA. Because we loaded 10 μg GM-CSF total into the NPs, our samples for entrapment and release studies required significant dilution to fall in the range of detection. Samples were diluted appropriately in Reagent Diluent (R&D Systems, DY995). The plates were measured for absorbance at both 450 nm and 540 nm with a BioTek plate reader. Samples were assessed in duplicate, and final optical density (OD) measures were taken by subtracting 540 nm values (the plate) from 450 nm OD values.
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6

Quantifying Mouse C3a Levels

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Plasma samples were prepared in 10 mM EDTA from whole blood collected by terminal cardiac puncture. Cells were removed from plasma by centrifugation. 96-well plates were coated with capture rat anti-mouse C3a antibody (BD Pharmingen, 558250) at 1 μg/µl in pH 6.5 PBS overnight at 4°C. Samples were diluted 1:100 in Reagent Diluent (Reagent Diluent 1, R&D Systems, DY997) and incubated overnight at 4°C. Biotin rat anti-mouse C3a antibody at 0.5 μg/µl (BD Pharmigen, 558251) was used, and analyzed by ELISA using the manufacturer’s protocol.
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7

Immunofluorescence Staining of Frozen Tissue

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Tissues were fixed in 1% paraformaldehyde (PFA) overnight at 4°C, dehydrated in 30% sucrose and frozen in optimum cutting temperature (OCT) compound (VWR). Frozen sections were stained with antibodies (1:100) in buffer containing 0.1 M TRIS, 1% bovine serum albumin (Reagent diluent, R&D), 1% mouse serum and 0.3% Triton X-100 (Sigma) overnight at 4°C. Images were acquired using a Leica TCS SP8 microscope and 40X oil immersion objective.
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8

Quantifying Circulating PON-1 Levels and Activity

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Circulating levels of human total PON-1 were measured in Lithium-heparin plasma by an enzyme-linked immunosorbent assay (ELISA) purchased from R&D Systems (catalog No. DYC5816-5) and performed according to the manufacturer’s recommendations. Samples for ELISA were prepared at 100× dilution in sample diluent purchased from R&D Systems (catalog No. DYC001). The ELISA assay kit contained human total PON-1 capture antibody, detection antibody, PON-1 standard and streptavidin HRP. Additional reagents such as reagent diluent (catalog No. DY995), substrate solution (catalogue No. DY999), and stop solution (catalog No. DY994) were also purchased from R&D systems. The minimum and maximum amount of detectable PON-1 were 0.15 ng/mL and 10 ng/mL, respectively. Western blot was performed independently using a monoclonal antibody to PON-1 [31 (link)] to validate the ability of the ELISA to detect the presence of circulating PON-1 protein in plasma (Figure S4).
Circulating lactonase activity of PON was measured in the patient serum samples with a commercially available fluorometric assay (BioVision Incorporated, catalog # K999-100). Serum PON lactonase activity was calculated as the hydrolytic activity toward a fluorogenic benzopyran-2-one substrate of PON in the presence and absence of a specific PON inhibitor (2-hydroxyquinoline) according to the manufacturer’s protocol.
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9

Inflammatory Cytokine Response in HUVEC and HCAEC

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HUVEC or HCAEC were seeded at 80 000 cells/well in fibronectin coated 24‐well plates. Cells were treated for 30 min with peak metabolite profiles identified previously at 1, 6, 24 h post consumption (Table 1) or 0.01% DMSO (vehicle control) prior to the addition of 10 ng/mL (HUVEC) or 0.1 ng/mL (HCAEC) TNF‐α (determined as providing maximal induction while maintaining physiologically relevant concentrations following time‐ and concentration‐response experiments), and incubated for 24 h at 37°C, 5% CO2, in a humidified atmosphere. Supernatants were collected on ice, centrifuged at 2000 ×g for 10 min at 4°C, and stored at ‐80°C prior to ELISA. Samples were thawed at room temperature and vortexed for 3 × 5 s immediately prior to analysis. Supernatants were diluted 1:1 in Reagent Diluent (R&D Systems) and protein expression of soluble VCAM‐1 (sVCAM‐1; hereby referred to as VCAM‐1) and IL‐6 were determined by commercially available DuoSet enzyme‐linked immunosorbent assay (ELISA) (R&D Systems), according to the manufacturer's instructions. Absorbance values for all ELISA plates were recorded using an OMEGA plate reader from BMG LABTECH (Bucks, UK).
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10

Neutrophil-Candida NGAL Quantification

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Neutrophils were plated in a clear flat bottom 96-well plate (Corning) at 1e5 cells per well with LPS or vehicle control and incubated at 37°C, 5% CO2 for 10 minutes. Live C. albicans were then added at a MOI of 10 and co-incubated for 2 hours at 37°C, 5% CO2. Supernatant was collected and diluted to 1:2048 in reagent diluent (R&D Systems, Minneapolis, MN). Diluted supernatants were applied to a Mouse Lipocalin-2/NGAL DuoSet ELISA and run according to the manufacturer’s protocol to determine the concentration of NGAL. The ELISA was analyzed on a SpectraMax i3x reader at 650nM. NGAL concentrations were determined by comparison to a NGAL standard curve and expressed as picograms/mL (pg/mL).
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