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15 protocols using metronidazole

1

Comprehensive Pharmacological Compound Database

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Amoxicillin, atropine, carbamazepine, dicloxacillin, digoxin, erythromycin, estradiol, furosemide, halothane, streptomycin, ticlopidine and lipopolysaccharide (LPS) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Allopurinol, azathioprine, diclofenac, diphenhydramine, flutamide, ibuprofen, imipramine, indomethacin, isoniazid, kanamycin, ketoconazole, metronidazole, nifedipine, phenobarbital, phenytoin, pioglitazone, sulfamethoxazole, troglitazone and valproic acid were purchased from Wako Pure Chemical (Osaka, Japan). Primidone was purchased from the Tokyo Chemical Industry (Tokyo, Japan). Primers were commercially synthesized at Life Technologies (Carlsbad, CA, USA). HaCaT cells were purchased from CLS Cell Lines Service (Eppelheim, Germany). CnT-Prime (CnT-PR) Epithelial Culture Medium and CnT-Prime 2D Diff (CnT-PR-D) Epithelial Culture Medium were from CELLnTEC Advanced Systems (Bern, Switzerland). All other chemicals and solvents were of analytical grade or the highest grade commercially available.
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2

Modifying Gut Microbiome Composition in Rats

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To modify intestinal bacteria composition, Su/Hx rats were treated with a cocktail of
antibiotics (Fig. 1). The
antibiotic cocktail contained 1 g/L ampicillin (Sigma), 500 mg/L vancomycin (Wako, Osaka,
Japan), 1 g/L neomycin (Wako), and 1 g/L metronidazole (Wako), according to a previous report.25 (link) Antibiotics were dissolved in sterilized drinking water. The drinking water and
food were replaced with fresh water and food three times a week. Antibiotic administration
(pretreatment) was started one week before SU5416 treatment and continued until the end of
the study period.
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3

Antibiotics Growth Inhibition Assay

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We used the following antibiotics: from Sigma (St. Louis, MO, USA), gentamicin and metronidazole; from Wako (Osaka, Japan), ampicillin and clindamycin. Freshly cultured P. gulae in the exponential phase of growth were employed so that antibiotics reactions could be observed for 24 h. Bacterial growth was measured on an SH-1000 Lab microplate reader (Corona Electric, Ibaraki, Japan) at 595 nm.
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4

Antibiotic Water Treatment for Mice

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Antibiotic water was produced by mixing 1 g/L of metronidazole (Fujifilm Wako Pure Chemical Co., Osaka, Japan), 1 g/L ampicillin sodium (Fujifilm Wako Pure Chemical Co.), 1 g/L neomycin sulfate (Fujifilm Wako Pure Chemical Co.), and 0.5 g/L of vancomycin hydrochloride (Fujifilm Wako Pure Chemical Co.) in drinking water. While the antibiotic water treatment, mice had access to water bottle filled with antibiotic water ad libitum, and no access to tap water. To weaken intestinal flora, mice had been treated antibiotic water for at least 2 weeks.
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5

Antibiotic-Induced Osteoporosis in Mice

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We investigated the role of commensal bacteria in osteoporosis with eight-week-old C57BL/6J female mice that were administered a mixture of antibiotics for four weeks: ampicillin (1 g/L; FUJIFILM Wako Pure Chemical Corp., Osaka, Japan), neomycin (1 g/L; FUJIFILM Wako Pure Chemical Corp.), metronidazole (500 mg/L; FUJIFILM Wako Pure Chemical Corp.), and vancomycin (500 mg/L; FUJIFILM Wako Pure Chemical Corp.) mixed in drinking water, to decontaminate the digestive tract (n = 7–10 per group). The control mice received normal drinking water. After the experimental period, blood and the left tibia were collected to assess bone homeostasis.
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6

Antibacterial Activity Evaluation Protocols

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Two methods were used for the evaluation of antibacterial activity. To measure the MIC value of nisin A (Sigma–Aldrich, St. Louis, USA), the microdilution method was used as described elsewhere [23 (link)]. Bacitracin (Fujifilm Wako chemicals, Osaka, Japan), vancomycin (Sigma–Aldrich), Metronidazole (Fujifilm Wako chemicals), ampicillin (Nacalai Tesque, Kyoto, Japan), chloramphenicol (Wako chemicals), gentamicin (Nacalai Tesque), ofloxacin (Sigma–Aldrich) and imipenem (Fujifilm Wako chemicals) were also used for MIC evaluations.
To assess the antibacterial activity of the bacteriocins, a direct assay was performed by a method described elsewhere [23 (link)]. An overnight culture (3 μl) of the bacteriocin-producing strain, as indicator bacteria, was spotted on a TSA plate and cultured at 37°C for 24 h. Then, 3.5 ml of prewarmed BHI soft agar (0.75%) containing C. difficile cells (108 cells/ml) was poured over the TSA plate. The plates were incubated anaerobically at 37°C for 24 h. Then, the diameters of the growth inhibitory zones were measured in three directions. Three independent experiments were performed, and the average diameters were calculated.
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7

Antibiotic-Induced Gut Microbiota Modulation and Liraglutide Effects

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Antibiotics (ampicillin 1 g/L, neomycin 1 g/L, metronidazole 1 g/L; FUJIFILM Wako Pure Chemical Corporation) were administered in drinking water to depress gut microbiota. Two weeks after initiation of the antibiotics, we administered a single subcutaneous injection of liraglutide or saline to the mice. After the mice were fasted for 16 h, food intake was measured 1, 3, 6, and 24 h later. Mice that drank water without antibiotics were used as controls to perform experiments in the same way.
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8

Colon Tumor Induction in Mice

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Male BALB/c mice were purchased from Charles River Laboratories (Yokohama, Japan). To induce colon tumors, 5‐week‐old mice were i.p. injected with 10 mg/kg body weight of AOM (NARD Institute, Amagasaki, Japan) or PBS (Wako, Osaka, Japan) as control. Antibiotics [6 μg/body ciprofloxacin (LKT Laboratories, Inc., St Paul, MN, USA), 0.2 mg/body metronidazole (Wako), 0.2 mg/body neomycin (AppliChem GmbH, Darmstadt, Germany), 0.1 mg/body vancomycin (Wako)] were given by gavage for 2 weeks after AOM injection. At 6 weeks of age, DSS (molecular weight, 36 000‐50 000; MP Biochemicals, Solon, OH, USA) was given in drinking water at a concentration of 1.5% w/v. Timing and duration of the treatment are shown in Figure 1A. All the animal experiments were approved by the Committee for Ethics in Animal Experimentation at Meiji Co., Ltd and National Cancer Center.
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9

High-Fat Diet and Gut Microbiome Modulation in Mice

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C57BL6/J mice were housed under a 12-h light–dark cycle and given regular chow (MF, Oriental Yeast Co). All experimental procedures involving mice were performed according to protocols approved by the Committee on the Ethics of Animal Experiments of the Tokyo University of Agriculture and Technology. (Permit Number: 28–87). For HFD studies, 4-week-old male mice were placed on a D12492 diet (60% kcal fat, Research Diets) for 12 weeks. The generation of Gpr43-/- was described previously[18 (link)]; the mice were maintained on a C57BL6/J genetic background. aP2-Gpr43TG mice were generated as previously[18 (link)]. For antibiotic treatment, 4-6-week-old mice were treated with ampicillin (Nacalai Tesque; 0.4 mg/ml), neomycin (Nacalai Tesque; 0.4 mg/ml), metronidazole (Wako; 0.4 mg/ml), gentamicin (Sigma; 0.4 mg/ml) and vancomycin (Sigma; 0.2 mg/ml) in drinking water for 3 weeks. For collection of blood and tissue samples, mice were sacrificed by anesthesia with somnopentyl. All efforts were made to minimize suffering.
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10

Antibiotic Susceptibility Testing of H. pylori

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Antibiotic susceptibility was detected using a serial two-fold agar dilution assay to determine the minimum inhibitory concentrations (MICs) of amoxicillin, clarithromycin, metronidazole, levofloxacin, and minocycline (Wako Pure Chemical Industry, Osaka, Japan) according to the guidelines of the Clinical and Laboratory Standards Institute (CLSI) (Wayne, PA, USA). Briefly, bacteria were subcultured on Mueller-Hinton II Agar medium (Becton Dickinson, Sparks, MD, USA) supplemented with 5% defibrinated horse blood. The bacterial suspension was adjusted to OD600 = 0.1, and a 48-pin inoculator was used to inoculate the culture plate (1 μL per spot, approximately 104 colony forming units [CFU] of bacteria). H. pylori strain 26695 was used as a control strain. MICs were judged according to the presence or absence of growth at the spots at the lowest concentration of antibiotic, followed by checking growth at the spots using 1:1 dilutions after 72-h incubation. Resistance or sensitivity to antibiotics was judged according to the guidelines of the European Committee on Antimicrobial Susceptibility Testing (EUCAST; http://www.eucast.org/). The clinical breakpoints of MICs indicating antibiotic resistance are >0.125 mg/L, amoxicillin; >0.5 mg/L, clarithromycin; >8 mg/L, metronidazole; >1 mg/L, levofloxacin; and >1 mg/L, minocycline. Duplicate agar dilution assays were repeated 2–3 times.
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