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39 protocols using penicillin

1

Transfection of ccRCC cell lines

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The 786-O and UOK-117 ccRCC cells were obtained from RIKEN BioResource Center (Ibaraki, Japan). Cells were cultured in RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc.), supplemented with 10% fetal bovine serum (FBS; Atlanta Biologicals, Lawrenceville, GA, USA), 100 U/ml penicillin and 100 µg/ml streptomycin at 37°C with 5% CO2. HK-2 cells were purchased from the American Type Culture Collection (Manassas, VA, USA). Cells were cultured as a monolayer in Keratinocyte Serum Free Medium (K-SFM) supplemented with 0.05 mg/ml bovine pituitary extract, 5 ng/ml human recombinant epidermal growth factor (EGF; Invitrogen; Thermo Fisher Scientific, Inc.) and 10% fetal bovine serum, 50 mg/ml penicillin and 50 mg/ml streptomycin (all from Invitrogen; Thermo Fisher Scientific, Inc.).
The miRNA inhibitors 2′-O-methyl antisense oligonucleotide targeting miR-21 (anti-miR-21), the miRNA inhibitor negative control (anti-miR-C), the pre-miR-21, and the mimic positive control were purchased from Shanghai GenePharma Co., Ltd. (Shanghai, China).
For transient transfection, a complex of Lipofectamine 2000 (Invitrogen Life Technologies) and plasmids or RNA oligonucleotides was prepared according to the manufacturer's instructions and directly combined with cells in 24-well cell culture plates at a density of 3×104 cells per well.
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2

Cell Culture Protocols for Cancer Research

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Macrophage 264.7, HT-29 and Colon 26 cells were cultured to confluency in 75-cm2 flasks at 37°C in a humidified atmosphere containing 5 % CO2. HT-29 Cell were cultured in McCoy’s 5A medium, Macrophage 264.7 cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM), and Colon 26 cells were culture in RPMI 1640 medium (Life Technologies, NY, USA). All these cases were supplemented with penicillin (100 U/ml), streptomycin (100 U/ml), and heat-inactivated fetal bovine serum (10 %) (Atlanta Biologicals, GA, USA). All these cell lines were obtained directly from ATCC (2009–2013) where they were tested and authenticated via morphology, and PCR to rule out interspecies and intraspecies contamination.
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3

Neuronal Culture Reagents and Protocols

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Trypsin, penicillin, streptomycin, heat-inactivated fetal bovine serum, horse serum, and soybean Trypsin inhibitor were obtained from Atlanta Biologicals (Norcross, GA, USA). Minimum essential medium (MEM), deoxyribonuclease (DNase), poly-L-lysine, poly-D-lysine hydrobromide, cytosine arabinoside, NMDA, protease inhibitor cocktail, MK-801, and ifenprodil were purchased from Sigma (St. Louis, MO, USA). Pluronic acid and Fluo-3 AM were purchased from Molecular Probes (Eugene, OR, USA). TCN-201, IPA-3, and NSC23766 were purchased from Tocris (Bristol, UK). Pierce ECL kits (Thermo Fisher Scientific, Rockford, IL, USA), Neurobasal, and B-27 supplements were purchased from Invitrogen Corporation (Carlsbad, CA, USA); the p-PAK1 antibody (Thr 212) from Santa Cruz Biotechnology (Dallas, TX, USA); and the PAK1 antibody anti-rabbit IgG HRP-linked antibody from Cell Signaling Technology (Danvers, MA, USA). Brevetoxin-2 (PbTx-2) was isolated and purified from Karinia breve cultures at the Center for Marine Sciences at the University of North Carolina (Wilmington, NC, USA). QNZ-46 was a gift from SF Traynelis, Department of Pharmacology, Emory University, Atlanta, GA. The GluN2D subtype of NMDA receptor knockout mice was obtained from Daniel T. Monaghan, Department of Pharmacology and Experimental Neuroscience, University of Nebraska Medical Center, Omaha, Nebraska.
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4

Culturing Breast Cancer and Mammary Cells

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Metastatic breast cancer cells (MDA-MB-231 cell line expressing EGFP) and non-tumorigenic mammary epithelial cells (MCF-10A cell line expressing dTomato variants) were kind gifts from Dr. Joseph Aslan at the Oregon Health & Science University. MDA-MB-231 cells were cultured every 3 to 4 days from passage 2 to 20, and used at 50-70% confluency [28 ]. The growth medium for MDA-MB-231 cells was composed of DMEM high glucose medium (Gibco, Life Technologies Corporation, Grand Island, NY), 10% fetal bovine serum (Atlanta biologicals, Lawenceville, GA), and 1% antibiotics (100 units/mL penicillin and 100 μg/mL streptomycin). MCF-10A cells were cultured every 3 to 4 days from passage 2 to 10, and used at 70-90% confluency. The growth medium for MCF-10A cells was composed of DMEM/F-12 medium (Gibco), 5% donor horse serum (Atlanta biologicals), 20 ng/mL human EGF (Gibco), 0.5 μg/mL hydrocortisone (Sigma-Aldrich, St. Louis, MO), 100 ng/mL Cholera Toxin (Sigma-Aldrich), 10 μg/mL insulin (Sigma-Aldrich), and 1% antibiotics (Gibco).
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5

RAW 264.7 Macrophage Cell Culture and Reagents

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RAW 264.7 macrophages were obtained from the American Type Culture Collection (ATCC TIB-71, Manassas, VA; Lots 70000171, 70012232 with cell identity confirmed by ATCC via growth properties, morphology, and COI assay). Cell media (supplemented DMEM) was composed of DMEM obtained from Thermo Fischer Scientific (Waltham, MA), fetal bovine serum (FBS, contains ~400 μM BSA as specified by manufacturer) from Millipore-Sigma (St. Louis, MO), penicillin, streptomycin and GlutaminePlus (L-alanyl-L-glutamine) from Atlanta Biologicals (Flowery Branch, GA). Dulbelcco's phosphate buffered saline (D-PBS) was from Gibco (Gaithersburg, MD). All cell media was regularly subjected to mycoplasma testing to ensure lack of infection. Matriplate 96 well imaging plates were from Matrical, Inc. (Spokane, WA). Acetylsalicylic acid (Lot SLBV2290), ibuprofen (Lot SLBX6584), acetaminophen (Lot SLBR2060V), diclofenac (Lot BCBS5961V), wortmannin (Lot 086M4026V), PDGF (Lot SLB63548V), and HEPES (free acid) were obtained from Millipore-Sigma (St. Louis, MO). Gö6976 (Lot 6A/174381) was purchased from Tocris Biosciences (Minneapolis, MN). CellMask Deep Red and Green membrane stains were purchased from ThermoFischer Scientific (Waltham, MA). Cell-culture grade DMSO was purchased from MP Biomedicals (Santa Ana, CA). AKT-PH-mRFP mammalian expression plasmid was subcloned by John H. Evans [26 (link), 30 (link)].
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6

Establishment of Ependymal Cell Cultures

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Primary ependymal cell cultures were established as described previously (Delgehyr et al., 2015 (link); Guirao et al., 2010 (link)). Briefly, brains of postnatal day 0–3 transgenic Arl13B-EGFPtgmice (Delling et al., 2013 (link)) or wild type mice were collected, telencephala dissected, the choroid plexus and meninges removed, the tissue enzymatically digested, cells mechanically dissociated, plated and grown to confluence. Confluent cell layers were trypsinized, and replated on poly-L-lysine coated coverslips at a density of 107 cells/ml in Dulbecco’s modified Eagle’s medium (DMEM) with high glucose, GlutaMAX supplement, and pyruvate (Life Technologies), 10% decomplemented fetal bovine serum (FBS, Atlanta Biologicals), and 100 units/ml penicillin/100 μg/ml streptomycin (Atlanta Biologicals), which was replaced by serum-free media the next day. Ependymal cells were cultured for up to two weeks.
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7

Differentiation and Analysis of CD4+ T Cell Subsets

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At the peak of EAE disease, the mice were sacrificed and CD4+ T cells were purified from spleens by CD4+ T cell isolation kit (Miltenyi, Auburn, CA). The purified T cells (2.5 × 106 cells/ml) were cultured in 96-well round-bottom microculture plates (Falcon Labware, Oxnard, CA) in RPMI-complete media containing RPMI 1640 (Life Technologies, Gaithersburg, MD), 10% FBS, and 100 μg/ml streptomycin and penicillin (Atlanta Biologicals Norcross, GA), 1 mM glutamine, 1 mM nonessential amino acids, and 50 μΜ 2-mercaptoethanol (Sigma-Aldrich).
For skewing of different CD4+ T cell subsets and their expansion, the isolated CD4+ T cells were stimulated with PLP139–151 (5 μg/ml) with IL-2 (10ng/ml) for TH0, IL-2 (10ng/ml), rhlL12p35 (10ng/ml), and anti-IL-4 (1μg/ml) for TH1, or rmlL12/23p40 homodimer (10ng/ml), anti-IFN-γ 1(μg/ml), anti-IL-4 (1 μg/ml) for TH17. All cytokines and antibodies were purchased from BD Biosciences (San Diego, CA). Following stimulation, the cells were harvested for adoptive transfer of EAE disease and the culture supernatants were collected for analysis of IFN-γ, IL-17, and IL-10 expression by ELISA (BioLegend Cat# 430802, 432505, and 431411; San Diego, CA).
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8

Cultivation and Maintenance of CHO-K1 and GH3 Cells

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Chinese hamster ovary (CHO-K1) cells and a murine pituitary cell line (GH3) were obtained from the American Type Culture Collection (ATCC, Manassas, VA) and maintained in culture at 37 °C, 5% CO2 per the supplier’s recommendations. CHO-K1 cells were cultured in Ham’s F12K medium supplemented with 10% fetal bovine serum (FBS, Atlanta Biologicals, Norcross, GA), 100 IU/mL penicillin, and 0.1 μg/mL streptomycin. GH3 cells were cultured in Ham’s F12K medium supplemented with 2.5% FBS, 15% horse serum (ATCC), 100 IU/mL penicillin, and 0.1 μg/mL streptomycin. The media and its components were purchased from Mediatech Cellgro (Herndon, VA). In the passage immediately preceding experiments, cells were transferred onto glass coverslips pretreated with poly-L-lysine to improve cell adhesion.
The composition of solutions utilized in different experiments is described in respective sections below. Chemicals were purchased from Sigma-Aldrich (St. Louis, MO) and Life Technologies (Grand Island, NY). The osmolality of the solutions was between 290 and 310 mOsm/kg, as measured by a freezing point microosmometer (Advanced Instruments, Inc., Norwood, MA). All experiments were performed at room temperature (22 ± 2 °C).
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9

Neuronal Cell Culture Reagents and Techniques

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Trypsin, penicillin, streptomycin, heat-inactivated fetal bovine serum, horse serum and soybean Trypsin inhibitor were obtained from Atlanta Biologicals (Norcross, GA, USA). Minimum essential medium, deoxyribonuclease (DNase), poly-l-lysine, cytosine arabinoside, Hoechest-33342, (+)-5-methyl-10,11-dihydro-5H-dibenzo[a,d]cyclohepten-5,10-imine maleate (MK-801), 2,3-dihydroxy-6-nitro-7-sulfamoyl-benzo[f]quinoxaline-2,3-dione (NBQX), 2-[2-[4-(4-Nitrobenzyloxy)phenyl]ethyl]isothiourea mesylate (KBR-7943), nifedipine, fluorescein diacetate, propidium iodide, dichloromethane and polyvinylpyrrolidone were from Sigma (St. Louis, MO, USA). Tetrodotoxin (TTX) was purchased from Tocris Cookson, Inc. (Ellisville, MO, USA). Anti-stress-activated protein kinase/c-Jun N-terminal kinase (SAPK/JNK) antibody and anti-phospho-SAPK/JNK (Thr183/Tyr185) were from Cell Signaling Technology (Danvers, MA, USA). Anthra[1-9-cd]pyrazol-6(2H)-one (SP 600125), 4-(4-Fluorophenyl)-2-[4-(methylsulfinyl) phenyl]-5-(4-pyridyl) 1H-imidazole (SB 203580), 1,4-diamino-2,3-dicyano-1,4-bis (2-aminophenylthio) butadiene (U0126) and N-benzyloxycarbonyl-Val-Ala-Asp fluoromethyl ketone (Z-VAD-FMK) were from Biomol International (Plymouth Meeting, PA, USA).
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10

Schistosoma mansoni Infection in Balb/c Mice

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Balb/c mice weighing 20–25 g were infected with 130 cercariae of S. mansoni released from experimentally infected B. pfeifferi by the tail and leg immersion technique. After 49 days, adult worms were recovered from mice's mesenteric veins and liver by perfusion with a sterile saline solution (0.9% NaCl) [38 (link)]. Freshly harvested worms were washed three times in a Glasgow Minimum Essential Medium (GMEM) (Sigma, St Louis, USA) supplemented with an antibiotic-antimycotic solution (10,000 U/mL penicillin, 10,000 μg/mL streptomycin, and 25 μg/mL amphotericin B) (Atlanta Biologicals, Lawrenceville, USA) and gentamicin (40 μg/mL).
The bioassay followed the standard operating procedures that recommended at least five female and five male worms per well [39 (link)]. Therefore, 10 adult worms of both sexes were transferred to each well of a 24-well culture plate with 1900 μL of complete GMEM, pH 7.5 (GMEM with 20 mM of HEPES, 40 μg/mL gentamicin, 50 μg/mL penicillin, 50 μg/mL streptomycin, 100 μg/mL neomycin, 2 mM of L-glutamine, and 5% heat-inactivated fetal bovine serum). The plates were then incubated for 2 hours at 37°C in a humid atmosphere of 5% CO2 to allow acclimatization.
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