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33 protocols using epon 812 resin

1

Ultrastructural Effects of Antibiotics on K. pneumoniae

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To analyze the action of antibiotics on K. pneumoniae isolates, these isolates were subjected to different sub-MICs of ampicillin, amoxicillin, ceftazidime, cefotaxime, aztreonam, and imipenem (Sigma-Aldrich) at 37°C for 6 hours, according to the origin and susceptibility profile of each isolate, using clinically relevant concentrations (Tables 1 and 2) [25 (link), 26 (link)]. In all the processes, a control for the isolate was included under the same conditions and at the same dilutions, without the presence of the antibiotic. After growth, the bacterial cells were centrifuged and fixed using 2.5% glutaraldehyde and 4% paraformaldehyde (Sigma-Aldrich). The cells were postfixed in 1% osmium tetroxide and then contrasted in 5% uranyl acetate (Electron Microscopy Science). Dehydration was carried out using acetone (Sigma-Aldrich) followed by infiltration and embedment of the material in epon 812 resin (Electron Microscopy Science). The samples were viewed under a transmission electron microscope (Zeiss EM109).
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2

Ultrastructural Analysis of Clownfish Skin

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A. ocellaris 3-4 cm individuals were euthanized using 200 mg/L of MS-222 Tricaine-S. White and orange skins were dissected in a mixture of 3% paraformaldehyde/3% glutaraldehyde in 0.1 M cacodylate buffer (pH 7.2), and fixed overnight at 4°C, according to (Djurdjevič et al., 2015 (link)). After 1% OsO4 post-fixation (1 hour at RT) individuals were dehydrated in a graded series of ethanol solutions and embedded in Epon 812 resin (Electron Microscopy Science). Ultra-thin (80 nm) sections were cut using a Leica Ultracut R microtome, contrasted with uranyl acetate and lead citrate and examined with a Hitachi H7500 TEM.
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3

Transmission Electron Microscopy of NP-treated Cells

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CHO cells were grown in two-well LabTek chamber slides and incubated with 100 μg/mL NPs for 1 or 24 hours. After incubation, cells were washed and fixed with a mixture of 4% (weight per volume [w/v]) paraformaldehyde and 2% (v/v) glutaraldehyde in 0.1 M cacodylate buffer, pH 7.4, for 2 hours at RT. Post-fixation was carried out in 1% osmium tetroxide in 0.1 M cacodylate buffer for 2 hours, followed by dehydration in graded ethanol and embedding in Epon 812 resin (Electron Microscopy Sciences, Hatfield, PA, USA) as described previously.4 (link),51 (link),52 (link) Ultrathin sections were counterstained with uranyl acetate and lead citrate and examined with TEM (CM100; Philips, Amsterdam, the Netherlands).
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4

Electron Microscopy Analysis of Bacteria-like Forms

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For thin sections, the specimens were washed twice with HEPES buffer prior to dehydration with several washes of ethanol of gradually increasing concentration (10–90%). Samples were embedded with Epon 812 resin (Electron Microscopy Sciences, Fort Washington, PA). Thin sections of incubated blood or isolated bacteria-like forms were prepared as before22 (link) using a Leica Ultracut UCT microtome (Leica Microsystems, Wetzlar, Germany). Specimens were examined under a JEM-100B (JEOL, Tokyo, Japan) TEM. For negative-staining, incubated blood or isolated bacteria-like forms were deposited onto formvar carbon-coated grids and negatively stained with 0.5% aqueous uranyl acetate, followed by drying overnight. Phosphatidylserine was detected as before36 (link) using annexin V conjugated to 10-nm gold nanoparticles (BBI Solutions, Blaenavon, UK).
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5

Biodistribution of Functionalized Gold Nanospheres

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Mice were injected IP or IV with 0.8 mg of F-AuNSs suspended in 100 μL PBS . The mice were sacrificed at 7-, 45- or 90-days postinjection. Liver, spleen, and kidneys were then retrieved. All tissues were dissected into 1 mm by 1 mm pieces with razor blades and immediately immersed in 2.5% glutaraldehyde in 0.1 m cacodylate buffer (pH 7.4 ± 0.1) for 24 h at 4 °C. The specimens were further fixed with 1% osmium tetroxide for 1 h and enblock stained with 1% uranyl acetate for 30 min. The samples were dehydrated with a graded ethanol series and then infiltrated with Epon 812 resin (Electron Microscopy Sciences) using propylene oxide as a transition solvent. The Epon 812 was polymerized at 60 °C for 48 h, sectioned at 70 nm using a Leica EM UC7 Ultramicrotome and collected on 300 mesh nickel grids. The sections were stained with 2% uranyl acetate and lead citrate. TEM imaging was performed on a Tecnai T12 at 100 kV using an AMT CCD camera. The surface area of >100 single particles in TEM images at each time point was measured with ImageJ. The average surface area of those particles at each time point was compared that to as-prepared F-AuNSs before injection.
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6

Electron Microscopy Sample Preparation

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The cells were fixed with 2% paraformaldehyde and 2% glutaraldehyde (Electron Microscopy Sciences, PA, USA) in 0.1 M cacodylate buffer overnight at 4°C, after which the cells were washed three times with 0.1 M cacodylate buffer for 10 min each. The cells were subsequently fixed with 1% OsO4 for 1h at RT and washed three times with 0.1 M cacodylate buffer for 10 min each. Dehydration was performed by incubating the samples in ascending EtOH concentrations of 50, 60, 70, 80, 90, 95, and 100% to completely remove residual water from the cells. The samples were then infiltrated with a mixture of absolute EtOH and Epon 812 resin (Electron Microscopy Sciences, PA, USA) at ratios of 3:1, 1:1, and 1:3 for 2 h at each step. Pure resin was then applied twice, first for 4 h and then overnight, with gentle agitation. The cells were then embedded in fresh pure resin and polymerized at 60°C overnight. Ultrathin sections were generated with a Leica EM UC6 ultramicrotome and contrasted with uranyl acetate and lead citrate. These sections were then viewed under a Hitachi H-7500 transmission electron microscope.
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7

Quantifying Synaptic Ultrastructure in Drosophila

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Flat block molds (Electron Microscopy Sciences) were half filled with Epon-812 resin and heated at 60°C until the resin reached a tacky consistency (approximately 4 hours). Samples were then placed in blocks, the brains oriented anterior up and dorsal forward (toward the block face). Blocks were filled with resin and allowed to fully polymerize for 48 hours at 60°C. After polymerization, thick sections (500nm) were cut using a Leica UCT Ultracut microtome until the dorsal most brain region appeared (first sight of brain tissue in sections). Thick section (500nm) cutting was then continued until the MB calyx was reached (approximately 40μm). Thin sections (65nm) were then cut for another 20μm, and collected on formvar-coated grids (Electron Microscopy Sciences) at 10 sections per grid. Images were acquired using a Philips CM10 transmission electron microscope (TEM) at 80kV. Measurements were taken with ImageJ freehand selection tool. 5–10 PN boutons were quantified within each MB calyx. To eliminate the chance of reimaging synaptic boutons, only one section per grid was imaged, with at least 5 grids (~3μm) of space between each grid examined. 3 animals were used for each EM grid, with 5 MB calyces analyzed per genotype. For sample size, 16 control and 22 dfmr1 sections were examined, with 70 control and 80 dfmr1 boutons, respectively.
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8

Transmission Electron Microscopy Sample Preparation

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The TEM samples were prepared as previously reported.24 In brief, the samples were fixed in 0.1 M cacodylate buffer including 4% paraformaldehyde and 2% glutaraldehyde for 2 h at room temperature. Samples were then post‐fixed by 1% osmium tetroxide for 2 h, dehydrated by graded ethanol and embedded in Epon 812 resin (Electron Microscopy Sciences, USA). Ultrathin sections were counterstained with uranyl acetate and lead citrate and visualized with JEM‐1400FLASH Transmission Electron Microscope (JEOL, Japan).
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9

Correlative Light-Electron Microscopy of Centrosome

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RPE-1 cells grown on 35 mm glass bottom dishes (MatTek Corporation) were co-transfected with a plasmid expressing GFP-Centrin2 and indicated siRNAs for 48 h. The culture media was changed to Opti-MEM reduced serum media (Life Technologies) to promote the formation of primary cilia for 24 h. We then performed correlative light and electron microscopy strategy to observe the structure of TZ. Briefly, we first selected centrosomes by light microscope and then the same centrosome was imaged on the electron microscope. Cells were fixed for 1 h at room temperature with 4% paraformaldehyde and 2% glutaraldehyde buffered in PBS buffer. Samples were imaged with ×63/1.40 oil objective on Zeiss LSM 880 system. After target cells were selected and marked on the light microscope, cells were incubated in 0.15% Tannic acid in PBS buffer for 1 min, post-fixed in 2% OsO4 in sodium cacodylate buffer for 1 h on ice, prestained with 1% uranyl acetate diluted in ddH2O for 1 h at 4 °C, dehydrated in a graded series of ethanol, infiltrated with EPON812 resin (Electron Microscopy Sciences), and then embedded in the resin. Serial sections (60–80 nm thickness) were cut on a microtome (Ultracut UC6; Leica) and stained with 1% uranyl acetate as well as 1% lead citrate. Samples were examined on a JOEL transmission electron microscope.
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10

Electron Microscopy of Zebrafish Larvae

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7 dpf larvae were fixed with 1.0% paraformaldehyde, 2.5% glutaraldehyde in 0.06-M cacodylate buffer (pH 7.4) overnight at 4°C. Post fixation, samples were washed in cacodylate buffer and post-fixed with 1% osmium tetroxide and then dehydrated by a series of methanol and acetonitrile washes. Larvae were infused with Epon 812 resin (Electron Microscopy Sciences, Hatfield, PA, USA) incubating with 1:1 acetonitrile:Epon for one hour, followed by an incubation in 100% Epon in a 37°C degree water bath, then 100% Epon in a 37°C heat block. Finally, larvae were embedded in 100% Epon and hardened at 65°C for 24 hours. For transmission electron microscopy (TEM) analysis, 70-nm sections were cut, collected on hexagonal grids, and stained with uranyl acetate and lead citrate for contrast, followed by imaging on a Hitachi H-600 Transmission Electron Microscope (Hitachi, Ltd., Tokyo, Japan).
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