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5 protocols using 5 triphosphate double stranded rna 5 ppp dsrna

1

Reovirus genome extraction and transfection

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The reovirus genome was recovered from the purified virus particles using the RNeasy Mini Kit (Qiagen) according to the manufacturer's instructions. Isolated reovirus genome was transfected to cells pretreated with the cathepsin inhibitors using Lipofectamine 2000 Transfection Reagent (Invitrogen) at 200 ng/mL. A RIG-I agonist 5′-triphosphate double-stranded RNA (5′-ppp dsRNA) was purchased from InvivoGen (San Diego, CA) and similarly transfected at 1 μg/mL. Total RNA was recovered 24 hrs after transfection, and subsequently qRT-PCR analysis was performed as described above.
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2

Innate Immune Stimulant Protocols

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Ultra pure Lipopolysaccharide (LPS) from E. coli 0111:B4, Lipoteichoic acid (LTA), Pam3CSK4, FSL-1, HKLM, polyI:C (HMW), FlTC-labelled polyI:C (HMW), R848, CpG and 5’ triphosphate double stranded RNA (5’ ppp-dsRNA) were purchased from InvivoGen (San Diego, USA), M-CSF, ELISA DuoSets and IFNβ antibodies were obtained from R&D Systems, (Abington, UK). Fluorescently labelled secondary antibodies were purchased from Jackson ImmunoResearch Laboratories (PA, USA). hBD3 (GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKK) was from Peptides International, and cys-ser hBD3 and cys-ser-TAMRA hBD3 were from Almac (Almac Group Ltd, Craigavon, UK).
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3

Toll-like Receptor Activation in Cells

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LPS (Escherichia coli 0111:B4, used at 100 ng ml−1) and polyinosinic:polycytidylic acid (PolyI:C, used at 10 μg ml−1) were purchased from Sigma. 5′ Triphosphate double-stranded RNA (5′ ppp-dsRNA) was purchased from InvivoGen. Monoclonal antibody to Interferon A Receptor (anti-IFNAR, MAR103, used at 10 μg ml−1) was purchased from eBiosciences. Sendai virus was purchased from ATCC.
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4

RIG-1 Signaling in Primary Human Astrocytes

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Human astrocytes were grown in culture as described in de Rivero Vaccari et al. in 2012
[10 (link)]. Primary human astrocytes (Lonza Basel, Switzerland) were grown in culture in complete Astrocyte Growth Medium (Lonza Basel, Switzerland) for seven days. RIG-1 signaling was stimulated with 5′ triphosphate double-stranded RNA (5′ppp dsRNA, Invivogen San Diego, CA, USA) as a specific ligand to stimulate RIG-1 signaling at different concentrations (2 and 4 μg/ml) for 18 hours. After stimulation, cells were harvested and immunoblotted for RIG-1 (Anaspec Fremont, CA, USA), phosphorylated IRF3 (Novus Biologicals Littleton, CO, USA), amyloid precursor protein (Abcam Cambridge, MA, USA) and amyloid-β (Epitomics Burlingame, CA, USA) expression as described.
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5

Synthetic RIG-I Agonist and Recombinant HA Protein

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5' triphosphate double stranded RNA (5' ppp-dsRNA), a synthetic ligand for retinoic acid-inducible protein (RIG-I), was purchased from Invivogen (San Diego, CA). The biological activity and absence of bacterial contamination of 5' ppp-dsRNA have been confirmed by the manufacturer. GenJet™ Plus DNA In Vivo Tranfection Reagent (SignaGen, CA) was used to deliver 5'ppp-dsRNA. Recombinant HA protein from A/Shanghai/2/2013 (rH7HA) influenza virus was expressed and purified using the baculovirus expression vector system, as described previously [11 (link)].
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