The largest database of trusted experimental protocols

4 protocols using tyr416

1

Western Blot Analysis of Alzheimer's Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were made up in dissociation buffer (1× dissociation buffer (100 mm Tris-HCl, 2% (w/v) SDS, 10% (v/v) glycerol, 100 mm DTT, 0.02% (w/v) bromphenol blue, pH 6.8) and heated at 95 °C for 5 min. Proteins were resolved by SDS-PAGE on 7–17% acrylamide Tris-glycine gels and then transferred to Hybond polyvinylidene difluoride membranes (GE Healthcare). Following electrotransfer, the membranes were blocked for 1 h in PBS with 0.1% Tween 20 (PBST) and 5% (w/v) nonfat milk and then incubated with primary antibody overnight at 4 °C. Antigens were probed using the following primary antibodies: anti-APP (22C11, Millipore), SAF32 (anti-PrP N terminus, Cayman Chemical), 8H4 (anti-PrP residues 175–185), anti-ADAM10 antibody (Abcam), 6E10 (anti-Aβ(1–17), Merck Biosciences), AC15 (anti-β-actin) and synapsin 1 (Sigma), 2B3 (anti-human sAPPα, Immuno-Biological Laboratories), and anti-phospho-Src family kinase (Tyr-416; Cell Signaling Technology). Primary antibodies were detected by incubation with horseradish peroxidase–conjugated secondary antibody, both in PBST containing 2% BSA. Bound horseradish peroxidase conjugates were visualized using the ECL® detection system with a Syngene Gbox XT4 (Syngene). Densitometric analysis was performed using Genetools analysis software (Syngene).
+ Open protocol
+ Expand
2

Western Blot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in Triton X sample buffer and separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Proteins were detected using specific antibodies against β-actin (#A5441, Sigma-Aldrich, St. Louis, MO, USA), Src (#2123, Cell Signaling, Cambridge, UK), phosphorylated Src (Tyr416, #2101, Cell Signaling), Akt (#9272, Cell Signaling), and phosphorylated Akt (Thr308, #2965, Cell Signaling and Ser473, #04-736, EMD-Millipore, Billerica, MA, USA). Protein bands were visualized by enhanced chemiluminescence using a commercially available kit (GE Healthcare, Little Chalfont, UK). Pixel density of western blots is given in percentage compared to untreated cell line (100 %). All experiments were performed at least in triplicate.
+ Open protocol
+ Expand
3

Phospho-Src Quantification in Mouse DRG Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultured mouse DRG neurons were treated with 20 nM PTHrP or 20 nM PTHrP with 100 nM PP2 or vehicle control for 10 min at 37°C and then lysed with lysis buffer containing 20 mM Tris-HCl, 150 mM NaCl, 1% Triton X-100, 1 mM sodium fluoride, 1 mM phenylmethanesulfonyl fluoride and 1× Protease Inhibitory Cocktail (leupeptin, aprotinin, antipain, and benzamidine-HCl). Lysates were run on a 7.5% SDS-PAGE gel and then transferred to nitrocellulose membranes. Following blocking in 4% non-fat milk in Tris-buffered saline, membranes were probed with either rabbit polyclonal anti-Src (1:1000, Clone 36D10, Cell Signaling, Danvers, MA) or rabbit polyclonal anti-Phospho-Src (1:1000, Tyr416, Cell Signaling) antibodies. Membranes were then washed and incubated with goat anti-rabbit IgG-HRP secondary antibody (1:5000, Antibodies Inc., Davis, CA). Blots were incubated with ECL-Plus reagent (Perkin Elmer, Waltham, MA), and the chemiluminescence signals were captured on X-ray film (Kodak-Biomax, Carestream Health, Rochester, NY). Experiments were repeated in four batches of cultured mouse DRG neuron lysates. Signal intensities of pSrc bands were normalized to the signal intensities of tSrc bands for each individual treatment groups using NIH ImageJ software, and presented as fold-change in pSrc levels upon PTHrP or PTHrP+PP2 treatment conditions.
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Tissue Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
IHC was performed using 5-mm-thick paraffin-embedded tissue sections. The sections were deparaffinized in xylene and dehydrated in a series of ethanol concentrations ranging from 100% to 70%. For antigen retrieval, specimens in citrate buffer (pH 6.0) or Target Retrieval Solution, pH 9.0 (DAKO) were heated in an autoclave at 110 C or microwave at 99 C for 15 minutes. The sections were incubated for 30 minutes in 3% hydrogen peroxide to deactivate endogenous peroxidases. After blocking the nonspecific binding of antibodies with Blocking One Histo (Nacalai Tesque), the specimens were incubated with primary antibodies at 4 C overnight. Antibody labeling was achieved using a DAKO EnVision Detection System (Dako) or horseradish peroxidase (HRP)-conjugated secondary antibodies. The sections were reacted with 3,3 0 -diaminobenzidine, counterstained with hematoxylin, and dipped in 0.2% ammonia water for bluing, and mounted. The images were taken using NanoZoomer (Hamamatsu Photonics KK) and BZ-X700 or BZ-X810 microscope (KEYENCE). Primary antibodies included antibodies against YAP (Cell Signaling Technology, #14074, 1:200), phospho-Src family (Tyr416; Cell Signaling Technology, #2101, 1:100), LIF (R&D Systems, #AF-250-NA, 1:100), Ki67 (Cell Signaling Technology, #9449, 1:200), and cleaved caspase-3 (Cell Signaling Technology, #9661, 1:200).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!