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25 protocols using ab131368

1

Immunoprecipitation and Western Blotting Protocol

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Protein A magnetic beads (100 μL; Bio-Rad Biotechnology) were incubated with 5 μg DcR2 (ab108421; Abcam), Flag (ab205606; Abcam), and rabbit monoclonal IgG antibody (ab172730; Abcam) at room temperature for 1 h. Protein G magnetic beads (100 μL) were incubated with 5 μg GRP78 (ab212054; Abcam), Myc (ab32; Abcam), and mouse IgG antibody (ab131368; Abcam) at room temperature for 1 h. The above beads were washed and collected. In addition, the renal tissues and cells were lysed with ice-cold IP Lysis buffer on ice for 30 min and 10 min, respectively. The lysate was then mixed with the Protein A or G magnetic beads and incubated at 4 °C overnight to form the immune complex, following which 100 µL of SDS-PAGE loading buffer was added prior to incubation at 100 °C for 10 min. Finally, the samples were subjected to western blotting with anti-GRP78, anti-DcR2, anti-Myc, or anti-Flag antibody.
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2

MAP Kinase Pathway Protein Profiling

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The cells were treated with MAPK or ERK inhibitor for 24 h and 5×105 cells were collected for Western blot analysis. Protein (20 μg) was extracted from the treated cells, run on sodium-dodecyl sulfate-polyacrylamide gels (10%), and transferred to nitrocellulose membranes. The membranes were blocked by 5% non-fat milk for 2 h at room temperature. The following primary antibodies were used for overnight incubation at 4°C: anti-caspase-3 (1: 1000, bs-0081R, Bioss, Beijing, China), anti-P53 (1: 2000, Cell Signaling), anti-p-MAPK14 (1: 1000, bs-5476R, Bioss, Beijing, China), anti-MAPK14 (1: 1000, bs-28027R, Bioss, Beijing, China), anti-MEK1 (1: 1000, ABclonal), and anti-p-MEK1 (1: 1000, ABclonal). After washing, the membranes were incubated with the secondary antibody (1: 100, ab131368, Abcam) for 2 h at room temperature. An Enhanced Chemiluminescence kit (No. RPN2133; GE Healthcare Life Sciences, Chicago, IL, USA) was added to the membrane prior to visualization with a gel imaging system (Thermo Fisher Scientific).
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3

Western Blot Analysis of Notch-1

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Protein was extracted from cell lines for western blotting as previously described (19 (link)). The anti-Notch-1 antibody (1:200, ab52627; Abcam) was incubated overnight at 4°C. After washing with 0.1% PBST (0.1% Tween-20), membranes were probed with anti-mouse or anti-rabbit horseradish peroxidase secondary antibodies (1:100; cat. nos. ab131368 and ab191866; Abcam) at room temperature for 2 h. Enhanced Chemiluminescent reagent kit (GE Healthcare Life Sciences, Chalfont, UK) was applied to assist the staining. The blots were scanned by ChemiDoc™ XRS (Bio-Rad Laboratories, Hercules, CA, USA) and grey density was analyzed by Quantity One v4.62.
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4

Western Blot Analysis of Apoptosis Proteins

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Western blotting was performed to measure the expression of Gli3, cleaved-caspase-3 and cleaved-PARP proteins. SiHa cells were homogenized in lysis buffer (Beyotime Institute of Biotechnology, Haimen, China) and the total protein was extracted by centrifuged at 16,000 × g at 4°C for 5 min. The proteins (20 µg/lane) were quantified according to the protocol of the BCA kit (cat. no. AR0146; Wuhan Boshide Biological Engineering Co. Ltd., Wuhan, China), separated by 10% SDS-PAGE and transferred onto a polyvinylidene fluoride membrane. Membranes were subsequently incubated with primary antibodies against Gli3 (1:1,000, PA5-19822; Invitrogen, Thermo Fisher Scientific, Inc.), cleaved-caspase-3 (1:500; ab49822) cleaved-PARP (1:1,000; ab32064), cyclin B1 (1:500; ab72), cyclin D1 (1:10,000; ab134175; all Abcam, Cambridge, UK) and GAPDH (1:1,000 dilution; MA5-15738; Invitrogen; Thermo Fisher Scientific, Inc.) for 1 h at room temperature. GAPDH was the internal control. Membranes were then incubated with horseradish peroxidase-conjugated anti-mouse (1:1,000; ab131368) and anti-rabbit (1:1,000; ab191866; Abcam) antibodies at room temperature for 2 h. Finally, membranes were incubated with BeyoECL Plus (Beyotime Institute of Biotechnology) and the detected using Chemi Doc™ XRS+ imaging system (Bio-Rad Laboratories, Inc., Hercules, CA, USA).
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5

Protein Extraction and Western Blot Analysis

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Whole cell extracts were prepared by incubating cell pellets in RIPA lysis buffer (ThermoFisher, P189901). Tumor extracts were prepared by mechanical homogenization of tissue in TPER tissue protein extraction reagent (ThermoFisher, 78510). All lysis buffers were supplemented with protease and phosphatase inhibitors (Roche, 05892791 & 09406837). Protein concentrations of cell extracts was determined by Pierce BCA Protein Assay (ThermoFisher, 23250) and equal quantities of protein were separated by SDS/PAGE 12% polyacrylamide gels (Bio-Rad, 456-8045) and transferred to nitrocellulose membranes (Bio-Rad, 1704158). Primary antibodies used in this study can be found in Table S2. Primary antibodies were detected with goat anti-mouse obtained from Abcam (ab131368) or donkey anti-rabbit conjugated to horseradish peroxidase obtained from GE Healthcare (NA934), using the Bio-Rad ChemiDoc XRS chemiluminescence imager. Densitometry quantification was performed within the Bio-Rad Image Lab software.
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6

Antibody Characterization for Influenza A

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Primary antibodies used in this study include rabbit anti-KAP1 antibody (ab10484; Abcam), mouse anti-KAP1 antibody (ab22553; Abcam), rabbit anti-Phospho KAP1 (S824) antibody (A300-767A, Bethyl); mouse anti-β-actin antibody (A2228; Sigma-Aldrich, Darmstadt, Germany); mouse anti-FLAG antibody (F1084, Sigma-Aldrich), rabbit anti-influenza A NS1 polyclonal antibody purchased from GeneTex, Inc. (GTX125990 Q-1; Irvine, CA, USA). Mouse anti-M1antibody and mouse anti-HA antibody, mouse anti-NP, rabbit anti-NS2, rabbit anti-PB2, rabbit anti-PB1, rabbit anti-PA, mouse anti-M2, and rabbit anti-WSN virus antibodies were available in our laboratory. Secondary antibodies were used as follows: HRP-conjugated sheep anti-mouse IgG (GE Healthcare, NA931), HRP-conjugated donkey anti-rabbit IgG (GE Healthcare, NA934), HRP-conjugated Clean-blot IP detection reagent (Thermo Fisher Scientific, Waltham, MA, USA, 21230). HRP-conjugated rat monoclonal (H139-52.1] anti-mouse kappa light chain (Abcam, ab99632) and HRP conjugated anti-mouse IgG (Abcam, ab131368) secondary antibodies for IP blot.
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7

Protein Extraction and Western Blot Analysis

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The total protein was abstracted by adding the corresponding pyrolysis solution (4°C for 30 minutes) (28–9425–44, ReadyPrep; GE Healthcare Life Sciences). After centrifugation at 876×g for 10 minutes, the supernatant was collected. Protein concentration was determined using bicinchoninic acid (BCA) protein assay kit (Beyotime Institute of Biotechnology, Shanghai, China). Proteins were processed on sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and later transferred onto nitrocellulose membrane as previously described [11 (link)]. After blocking with 5% nonfat milk (with Tween-20) at room temperature for 2 hours, the membrane were incubated with the primary antibodies against GAPDH (1:1000, TA-08, ZSbio, China), VEGF (1:1000, bs-1313R, Bioss), Sirt3 (1:1000, AF5135, Affinity), and LC3 (1:1000, ab48394, Abcam) overnight at 4°C. The secondary antibody (1:10 000, ab131368, Abcam, USA) was incubated with the membrane for 2 hours at room temperature. The expression of target proteins was normalized to GAPDH. At least 6 repeats were included in the western blotting.
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8

FLAG-Fusion Protein Immunoprecipitation

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All immunoprecipitations were performed in the absence of cross-linking reagents. Cells in six well plates were transfected with FLAG empty vector/FLAG fusion protein plasmid and corresponding candidates of interacting protein plasmids for 48 to 72 hr, and cell lysates were prepared in cell lysis buffer as described above. 40 µL anti-FLAG M2 agarose beads (Sigma) were used for the enrichment of FLAG-fusion proteins of each well by incubating with the supernatants overnight at 4°C on a vertical rotator. Sufficient washes were carried out at 4°C using lysis buffer with a total time of 30 min on a vertical rotator (5 to 6 washes), beads were pelleted by centrifuging at 5000 × g for 30 s after each wash. Proteins were eluted by boiling with 50 µL 2 × Laemmli loading buffer for 5 min and subsequent western blot was performed as described above. For the detection of eluted FLAG-fusion proteins, a particular HRP-conjugated secondary antibody (Abcam, Cat# ab131368) which preferentially detects the non-reduced form of mouse IgG over the reduced, SDS-denatured forms was used to eliminate the IgG band results from the anti-FLAG M2 beads.
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9

Immunoprecipitation of p53 and Ubiquitin

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Cell lysates were collected by 2% SDS lysis buffer and aliquots were used as input. Non-SDS lysis buffer was used to dilute to the rest of lysates. A total of 2 μg of anti-p53 (sc-126, Santa Cruz Biotechnology), anti-Ub (sc-8017, Santa Cruz Biotechnology) or normal IgG (sc-2025, Santa Cruz Biotechnology) was incubated with lysates. Dynabeads (ThermoFisher Scientific) were used for immunoprecipitation according to the manufacturer’s protocol. Immunoblotting was performed as above and anti-mouse IgG VeriBlot for IP secondary antibody (HRP) (ab131368, Abcam, Cambridge, UK) was used.
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10

Western Blot Analysis of Stem Cell Markers

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Total protein obtained from indicated HBMSCs was extracted using RIPA buffer. Subsequent to separation on SDS-PAGE, proteins were transferred to polyvinylidene fluoride membranes and then blocked in 5% skim milk. The membranes were subsequently incubated with primary antibodies at 4°C overnight, followed by incubation with secondary antibodies (ab131368, Abcam, Cambridge, MA, UK) for 1 h. After washing with Tris-buffered saline with Tween, the proteins were measured via enhanced chemiluminescence detection system. Primary antibodies used in this experiment were as follows: Anti-ETS1 (ab220361, Abcam), Anti-H3K9me2 (720092, Invitrogen), Anti-β-actin (K200058M, Solarbio, Beijing, China), Anti-KDM3A (ab243641, Abcam), Anti-β-catenin (ab32572, Abcam), Anti-RUNX2 (ab236639, Abcam), Anti-ALP (ab229126, Abcam), Anti-OSX (ab209484, Abcam), Anti-USP2 (ab66556, Abcam), Anti-GAPDH (ab8245, Abcam) and Anti-OCN (ab93876, Abcam).
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