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6 protocols using sodium deuteroxide

1

Preparation and Characterization of Deuterated Biomolecules

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Sodium phosphate tribasic anhydrous, tech. (Na3PO4) was purchased from Alfa-Aesar (Karlsruhe, Germany). Deuterium oxide (99.9 atom % D, D2O), deuterium chloride solution 35 wt. % in D2O (99 atom % D, DCl), sodium deuteroxide 30 wt. % in D2O (99 atom % D, NaOD), albumin from chicken egg white (OVA), concanavalin A from Canavalia ensiformis (Jack bean) type IV (ConA), bovine serum albumin (≥98.0%, BSA) and α-poly-L-lysine hydrobromide (mol wt. 15,000–30,000 by viscosity, PLL) were obtained by Sigma-Aldrich (Steinheim, Germany) and used as purchased.
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2

Fabrication of Ag/AgCl Electrodes

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DPhPC was purchased from Avanti Polar Lipids (Alabaster) and D2O (99.9% D) from Cambridge Isotope Laboratories (Andover, MA). Both were used as supplied. H2O was produced using a High-Q water purification system (Wilmette, IL). Buffering solution was prepared using 4-morpholinepropanesulfonic acid (MOPS, >99.5%) and potassium chloride (KCl, 99.0 to 100.5%), both purchased from Sigma-Aldrich, St. Louis, MI). Solution pH or pD (~7.4 in both cases) was adjusted, respectively, using sodium hydroxide or sodium deuteroxide (Sigma-Aldrich). A 125-μm diameter silver wire (Goodfellow, Pittsburgh, PA) with a ball-end formed through heating was bleached to produce silver/silver chloride (Ag/AgCl) wires. The ball ends were then coated with 1% agarose (ThermoFisher Scientific, Waltham, MA). Electrodes were used in pairs. Clear photopolymer resin was purchased from Formlabs (Somerville, MA) and used to 3D print transparent reservoirs (“stadia”) filled with hexadecane (>99%, Sigma-Aldrich).
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3

Deuterium Labeling for Structural Analysis

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Deuterium oxide (D2O, 99%) was
purchased from Cambridge Isotope laboratories (Andover, MA), and guanidine
hydrochloride (Gdn-HCl), deuterium chloride (DCl), and sodium deuteroxide
(NaOD) were from Sigma-Aldrich (St. Louis, MO). Lys-C was purchased
from Wako Chemicals USA (Richmond, VA); chymotrypsin and thermolysin
were from Sigma-Aldrich, and Glu-C was from Worthington Biochemical
(Lakewood, NJ). All other chemicals and materials used were either
reagent grade or of the highest quality commercially available.
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4

Synthesis of Alkaline Polymer Electrolytes

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Cobalt(II) acetate (Co(OAc)2·4H2O, 99.0%), manganese(II) acetate (Mn(OAc)2·4H2O, 99.0%), ammonium hydroxide (NH3·H2O, 25%-28%), potassium hydroxide (KOH, 99.99%), sodium hydroxide (NaOH, 99.99%) were purchased from China Medicine Shanghai Chemical Reagent Corporation. Sodium deuteroxide (40 wt% in D2O, 99 atom% D), deuterium oxide (D2O, 99.9 atom% D) were obtained from Sigma-Aldrich and used without further purification. Vulcan XC-72 (Cabot Co.), 60 wt% Pt/C (Johnson Matthey Co.), 60 wt% PtRu/C (Johnson Matthey Co.), Nafion (Dupont, 5%) were used as received. The alkaline polymer electrolytes (aQAPS-Sx) were prepared as reported in our previous work4 (link).
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5

Arginine Solubility and Structural Studies

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Solvents and reagents, unless otherwise indicated, were analytical-grade commercial products and used as received. L-arginine (≥98.5%), D-arginine (≥99%) and D,L-arginine (≥98.5%), sodium deoxycholate (≥97%), deuterium oxide (D2O, 99.9%), deuterium chloride (DCl, 99%) and sodium deuteroxide (NaOD, 40 wt % in D2O) were purchased from Sigma-Aldrich (Milano, Italy), while N,N’-methylenebisacrylamide (MBA, 96%) from Acros Organics (Milano, Italy). 0.3 M HCl and 0.3 M NaOH volumetric standard solutions were purchased from Fluka Analytics (Milano, Italy). Ultrapure water (18 MΩ cm−1), produced with a Millipore Milli-Q® apparatus (Darmstadt, Hesse, Germany), was used to prepare all solutions, except where stated otherwise (D2O).
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6

Hydrothermal Synthesis of L-Lysine Nanopolymers

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L-Lysine (> 98%, FG), hydrogen chloride (HCl, 37%) and sodium deuteroxide (NaOD) solutions, were purchased from Sigma Aldrich, and sodium hydroxide anhydrous pellets were purchased from Carlo Erba Reagent, ITA. Deuterium chloride (DCl, 20%) was purchased from Cambridge Isotope Laboratories, Inc. Distilled water was used as a solvent.
l-Lysine nanopolymers were obtained by hydrothermal treatment. 0.128 g of l-lysine were solubilized in 10 mL of distilled H2O (0.87 M). The solutions were placed into a Teflon-lined stainless steel autoclave7 (link) with a capacity of 50 mL and then heated at 130 or 200 °C for 15 h. After the hydrothermal treatment (HT), the obtained products were cooled down to 20 °C and then used for the characterizations. The samples hydrothermally treated at 130 and 200 °C are indicated in the text as HT-130 °C and HT-200 °C.
The pH of the precursor aqueous solutions of l-lysine was measured with a pH meter (pH 80 + DHS, Xs instrument). Four different pH values were used for the experiments: 2.5. 7.3 (obtained by adding 1 M HCl dropwise), 9.7 and 13 (obtained by adding droplets of 1 M NaOH).
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