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39 protocols using integrin β1

1

HGE Cell Adhesion on Biomaterials

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Well-grown HGEs were digested using trypsin, and the obtained cells were seeded on material surfaces of four groups (ppAA, ppAC, ppME and Control) at a density of 106 cells/well in cell incubator for 1 h. The samples were gently rinsed twice with PBS. The total RNA from HGEs was extracted to detect the expression levels of adhesion-related genes FAK, Plectin, ITG β1 (Table S2). Western blot was used to detect the expression of adhesion-related proteins, including FAK (1:1000, Cell Signaling Technology), Plectin (1:1000, Abcam) and Integrin β1 (1:200, Abcam). Immunofluorescence staining was conducted to detect the protein expression of FAK (1:200, Abcam) and Integrin β1 (1:200, Abcam).
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2

Western Blot Analysis of Cell Signaling

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The total cell lysates were separated by SDS-PAGE gel and followed by Western blot. The images were processed and the integrated optical densities (IOD) of the bands were analyzed by Image Lab 4.0 (Bio-Rad Laboratories, Inc.) software packages. The antibodies used in this experiment were as follows: MYLIP (ab74562, Abcam, USA), E-Cadherin (ab76055, Abcam, USA), ICAM-1 (sc-390483, Santa Cruz, USA), Integrin β1 (ab155145, Abcam, USA) and β-actin (sc-47778, Santa Cruz, USA).
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3

Protein Interaction Detection in Cells

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Cells cultured on confocal dishes were fixed with 4% PFA for 20 min at room temperature, permeabilized and incubated with primary antibodies at 4 °C. All primary antibodies were used at a 1:200 dilution. For in situ proximity ligation assay, protein–protein interactions between CD36 (Thermo) and Integrin β1 (abcam) were detected with secondary proximity probes (Anti-Rabbit Plus and Anti-Mouse Minus) according to the Duolink In Situ Fluorescence protocol (Sigma-Aldrich).
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4

Pluripotent Stem Cell Differentiation Protocol

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The main reagents include DMEM/F12 (1:1) medium, knockout serum replacement (KSR), valproic acid, fetal bovine serum, Essential 8™ Flex Medium, Geltrex™, KSFM medium, BMP‐4, bovine pituitary extract (BPE), (Gibco), NANOG, OCT4, SOX2, SSEA‐4, TRA‐1‐81, TRA‐1‐60, Krt19, Integrinβ1, CD200, CD31 and VEGF‐A antibodies (Abcam), PDGF‐B and Ang2 antibodies (Santa Cruz), recombinant human EGF (R&D), RA, valproic acid, sodium alginate (Sigma), Matrigel® Matrix (Corning), mTeSRTM1 medium (Stem Cell), Astragalus polysaccharide (Solarbio), silk fibroin and collagen (Hefei Bomei Bio), and Dextran Texas red™ (Invitrogen). Primers were designed using Primier 6.0 software, and all primers were synthesized as shown in Table 1.
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5

Integrin and Signaling Pathway Analysis

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The following antibodies were used: Alpha Smooth Muscle Actin (α-SMA) (1:1000; Sigma A2547), Periostin (1:100; Santa Cruz, SC67233), collagen I (1:500; MDBioproducts, #203002A), phospho-Akt (1:500; Cell Signaling, #4058S), Akt (1:500; Cell Signaling, #9272), pSmad2 (1:500; Cell Signaling, #3108S), Smad2/3 (1:500; Cell Signaling, #5678S), β-actin (1:5000; Sigma, #A5441) and SPRR3 (1:500; Proteintech group 11742–1-AP, or custom made) p-p38 (1:500; Cell Signaling), p38 (1:500; Cell Signaling), FAK (1:1000; Cell Signaling, #3285), p-FAK (1:500; Cell Signaling; #3283), GAPDH (1:500; Millipore; MAB374), p-PDGFRβ (Tyr751) (1:1000; Cell Signaling; #3161), PDGFRβ (28E1) (1:1000; Cell Signaling; #3169), integrin β1 (1:1000; R&D; #AF2405), total integrin β1 (flow cytometry, BD Pharmingen #550530), active integrin β1 (BD Pharmingen; #553715) and integrin β1 (Abcam; ab24693; 10 ug/ml for proliferation).
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6

Immunofluorescence Analysis of Stem Cell Markers

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rHFSCs (P3) were inoculated on a slide and cultured for 2 days. Cells were rinsed with PBS–Tween, fixed with 4% (w/v) paraformaldehyde (Kelong Chemical Reagent Company, Chengdu, China) and blocked with 5% (w/v) bovine serum albumin at room temperature. Integrin β1 (1:100; Abcam, Cambridge, UK), integrin α6 (1:50; Abcam) and CK15 (1:100; Abcam) antibodies were then added separately. PBS–Tween was added instead of primary antibody in the control group. After incubation at room temperature and washing with PBS–Tween, fluorescein-labeled secondary antibody was added (1:100; Jackson, San Francisco, CA, USA) and incubated in the dark for 30 minutes. 4′,6-Diamidino-2-phenylindole (1:2,000 dilution; Roche, La Roche, Switzerland) was then added and incubated for 5 minutes for nuclear staining. Cells were then air dried in the dark, mounted with Mounting Solution and observed using fluorescence microscopy (Olympus, Tokyo, Japan).
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7

Comprehensive Antibody Analysis for Cell Signaling

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The following antibodies were used: Alpha Smooth Muscle Actin (α‐SMA) (1:1000; Sigma A2547), Periostin (1:100; Santa Cruz, SC67233), collagen I (1:500; MD Bioproducts, #203002A), phospho‐Akt (1:500; Cell Signaling, #4058S), Akt (1:500; Cell Signaling, #9272), pSmad2 (1:500; Cell Signaling, #3108S), Smad2/3 (1:500; Cell Signaling, #5678S), β‐actin (1:5000; Sigma, #A5441), and SPRR3 (1:500; Proteintech group 11742‐1‐AP, or custom made) p‐p38 (1:500; Cell Signaling), p38 (1:500; Cell Signaling), FAK (1:1000; Cell Signaling, #3285), p‐FAK (1:500; Cell Signaling; #3283), GAPDH (1:500; Millipore; MAB374), p‐PDGFRβ (Tyr751) (1:1000; Cell Signaling; #3161), PDGFRβ (28E1) (1:1000; Cell Signaling; #3169), integrin β1 (1:1000; R&D; #AF2405), total integrin β1 (flow cytometry, BD Pharmingen #550530), active integrin β1 (BD Pharmingen; #553715), and integrin β1 (Abcam; ab24693; 10 ug/ml for proliferation).
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8

Rab GTPase and Endocytosis Protein Analysis

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Total proteins from cell lines were isolated by UREA buffer (8 M urea, 1 M thiourea, 0.5% CHAPS, 50 mM DTT and 24 mM spermine). Equal amounts of proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). After incubation with the indicated primary and secondary antibodies, signals were visualized by ECL. Membrane was then ready for scanning with the Image studio system. Protein quantification was conducted by ImageJ software. The antibodies used in this study are listed below: Rab5 (Abcam), Rab21 (Santa Cruz Biotechnology), Rab1 (ABclonal), Rab4 (ABclonal), Rab7 (ABclonal), Rab11 (ABclonal), Rabex5 (Santa Cruz Biotechnology), Rab25 (Santa Cruz Biotechnology), integrin β1 (Abcam), clathrin (Abcam), early endosomal antigen 1 (EEA1, Abcam), glutathione S-transferase (GST, ABclonal), Na-K-ATPase 1a1 (Proteintech), α-tublin (Proteintech), β-actin (Proteintech), GAPDH (Proteintech), goat anti-mouse IgG horseradish peroxidase (HRP, Abcam), and goat anti-rabbit IgG HRP (Abcam).
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9

Western Blot Analysis of Cellular Proteins

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Cells were collected and lysed in cold RIPA buffer, and the protein concentration was determined using a bicinchoninic acid assay kit (Pierce Biotechnology, Waltham, MA, USA). Protein samples were electrophoresed on 10% sodium dodecyl sulfate polyacrylamide gel and transferred to a polyvinylidene difluoride membrane (PVDF, Merck Millipore). The PVDF membrane was blocked in 5% nonfat milk buffer and then incubated with primary antibodies against E-cadherin (1:500, BD Biosciences), fibronectin (1:500, BioWorld), Pdx-1 (1:500, Abcam), Ki67 (1:500, Santa Cruz), extracellular signal-regulated kinase (ERK) 1/2 (1:500, Abcam), p-ERK1/2 (1:500, Cell Signaling Technology, Danvers, MA, USA), focal adhesion kinase (FAK, 1:500, Cell Signaling Technology), p-FAK (1:500, Cell Signaling Technology), Akt (1:500, Cell Signaling Technology), p-Akt (1:500, Cell Signaling Technology), integrin α5 (1:500, Abcam), integrin β1 (1:500, Abcam), cyclin D1 (1:500, Santa Cruz), p27 (1:500, Cell Signaling Technology), and β-actin (1:1,000, Santa Cruz) overnight at 4°C. The PVDF membrane was washed in PBST and incubated with horseradish peroxidase-conjugated secondary antibodies (1:2,000, Santa Cruz) at 37°C for 1 hour. The target protein band on the PVDF membrane was observed using an electrochemiluminescence kit (Pierce).
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10

Quantitative Analysis of Cell Phenotypes

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Cell surface antigens on cells were evaluated with FACS. The cells were dissociated with 0.05% trypsin/EDTA (Highclone), washed with PBS, fixed with 4% paraformaldehyde, permeabilized with Triton X‐100, and blocked with a BSA mixture. The samples were then stained with antibodies against human octamer‐binding transcription factor 4 (OCT4; R&D systems, 1:200), stage specific embryonic antigen 1 (SSEA1; R&D systems, 1:200), cluster of differentiation 31 (CD31‐FITC; Miltenyi Biotec, 1:100), CD34 (CD34‐PerCP, BioLegend, 1:100), human leukocyte antigen ‐ DR isotype (HLA‐DR, HLA‐DR‐APC, BioLegend, 1:100), CD73 (CD73‐PE, BioLegend, 1:100), CD90 (CD90‐APC, BioLegend, 1:200), CD105 (CD105‐FITC, BioLegend, 1:150), integrin α5 (Santa Cruz, 1:200), integrin α11 (Abcam, 1:200), integrin β1(Abcam, 1:200), and integrin β5 (BioLegend, 1:200) for 30 min or 1 h at 4 °C. Samples were subsequently stained with fluorescently labeled secondary antibodies (Alexa Fluor‐488 or 594 conjugated goat antirabbit (Abcam, 1:400), Alexa Fluor‐488 or 594 conjugated goat antimouse (Abcam, 1:400)) for 30 min at 4 °C. The corresponding mouse/rabbit isotype antibodies (Abcam, 1:200) were used as controls. Cell immunotypes were determined with the Accuri C6 flow cytometer (BD Biosciences) and the percentage of expressed cell surface antigens was calculated for 10 000 gated‐cell events.
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