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7 protocols using sodium malate

1

Cyanide-Containing Waste Recycling

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The industrial cyanide-containing waste from the jewelry was supplied by Avenir S.L. and Gemasur S.L. (Córdoba, Spain). Ammonium chloride, sodium acetate, sodium malate, sodium citrate, and sodium octanoate were supplied by Sigma–Aldrich (St. Louis-MO, USA). Nitrogen was purchased from Air Liquid (Paris, France). All other chemicals used in the study were of analytical grade. Solutions were prepared by using Milli-Q water (Millipore, Bedford-MA, USA). Wastes containing cyanide or other toxic chemicals were handled and disposed by the Environmental Protection Unit, University of Córdoba.
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2

Mitochondrial Oxygen Consumption Assay

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Mitochondrial oxygen consumption was measured using a Clark-type oxygen electrode (Yellow Springs Instruments, Yellow Springs, OH, USA). State 4 respiration rate was evaluated in 1.5mL of basic medium containing 125 mM KCl (Sigma-Aldrich, St. Louis, MO, USA), 10mM HEPES, 3 mM Pi and 10 mM succinate plus 1 µg/mL rotenone (Sigma-Aldrich, St. Louis, MO, USA), or 5 mM sodium glutamate (Sigma-Aldrich, St. Louis, MO, USA) plus 5 mM sodium malate (Sigma-Aldrich, St. Louis, MO, USA). State 3 respiration rate was measured after the addition of 200 µM ADP (Sigma-Aldrich, St. Louis, MO, USA). The respiratory control index (RC) was calculated as the ratio between state 3/state 4 rates. Uncoupled respiration was measured by adding CCCP (Sigma-Aldrich, St. Louis, MO, USA); phosphorylation efficiency was calculated from the added amount of ADP and the total amount of oxygen consumed during state 3 (ADP/O ratio) [22 (link)].
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3

ROS and NO Modulation in LPS-Triggered Monocytes

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To evaluate ROS and NO· levels, CD14+ monocytes were triggered by LPS in the presence or not of RWP 20 or 200 μg/mL. Where indicated, cells were treated also with 5 mM sodium malate (Sigma-Aldrich) or 500 μM NADPH (Sigma-Aldrich). Following 24 hours, ROS and NO· concentrations were measured by using 6-Carboxy-2′,7′-Dichlorodihydrofluorescein Diacetate (DCF-DA, Thermo Fisher Scientific) and 4-Amino-5-Methylamino-2′,7′-Difluorofluorescein Diacetate (DAF-FM Diacetate, Thermo Fisher Scientific), respectively, as previously reported [33 (link)].
For PGE2 quantification, cells were exposed to RWP 20 or 200 μg/mL for 1 hour and, where indicated, cotreated with 5 mM sodium acetate (Sigma-Aldrich); then inflammation was induced by LPS. At the end of 48 hours LPS treatment; PGE2 was measured by using DetectX® Prostaglandin E2 High Sensitivity Immunoassay Kit (Arbor Assays, Ann Arbor, MI, USA) as previously described [33 (link)].
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4

Inorganic Compound Preparation and Purification

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Chemicals such as Mg(NO3)2·6H2O (99%), Al(NO3)3·9H2O (≥98%), sodium citrate (99%), sodium malate (≥98%), serine (≥98%), NaOH (≥98%), NaHCO3 (99%), urea (99%) and HCl were obtained from Sigma-Aldrich LLC, St. Louis, MO, USA and used without further purification. Ca2+/Mg2+-free Dulbecco’s phosphate buffered saline (DPBS) was purchased from Thermo Fisher Scientific. The chemicals were used without further purification.
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5

Evaluating P. vera Extracts on Inflammatory Markers

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U937/PMA cells were stimulated with LPS in the presence or absence of P. vera extracts in solutions or in liposomes or in transfersomes (100 ng/mL) to measure ROS and NO• levels. Where indicated, the cells were treated also with 5 mM sodium malate (Sigma-Aldrich, Milan, Italy) or 500 μM NADPH (Sigma-Aldrich). After 24 h, ROS and NO• levels were measured by using 6-Carboxy-2′,7′-Dichlorodihydrofluorescein Diacetate (DCF-DA, Thermo Fisher Scientific, Milan, Italy) and 4-Amino-5-Methylamino-2′,7′-Difluorofluorescein Diacetate (DAF-FM Diacetate, Thermo Fisher Scientific), respectively.
For PGE2 quantification, the cells were exposed to P. vera extracts in solutions or in liposomes or in transfersomes (100 ng/mL) for 1 h and, where indicated, co-treated with 5 mM sodium acetate (Sigma-Aldrich); then, inflammation was induced by adding LPS. After 48 h, the PGE2 concentration was measured by using the DetectX® Prostaglandin E2 Immunoassay Kit (Arbor Assays, AnnArbor, MI, USA).
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6

Cellular Metabolism and Signaling Pathway Analysis

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Chemicals of the LW1564 series were synthesized and dissolved in 20 mM DMSO stock solution. Sodium pyruvate, sodium malate, sodium succinate, L-ascorbic acid, N,N,N,N-tetramethyl-p-phenylenediamine, rotenone, antimycin A, KCN and Nile red were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). HypoFluor MAR was purchased from GORYO Chemical, Inc. (Sapporo, Japan), and calcein AM was purchased from AnaSpec, Inc. (San Jose, CA, USA). Primary antibodies against the following proteins were used: HIF-1α (#610958, BD Biosciences, San Jose, CA, USA), CyclinD1 (#554180, BD Biosciences), β-tubulin (ab-15568, Abcam, Cambridge, Cambridgeshire, UK), β-actin (sc-47778, Santa Cruz, CA, USA), acetyl-CoA carboxylase-α (ACCα) (sc-30212, Santa Cruz), sterol regulatory element-binding protein (SREBP)-1 (sc-366, Santa Cruz), AMPKα (sc-25792, Santa Cruz), P-AMPKα (#2531, Cell Signaling, MA, USA), P-ACC (#3661, Cell Signaling), mTOR (#2983, Cell Signaling), P-mTOR (#2971, Cell Signaling), eukaryotic translation initiation factor 4E binding protein-1 (4EBP1) (#9644, Cell Signaling) and P-4EBP1 (#9459, Cell Signaling). A horseradish peroxidase-conjugated anti-mouse (LF-SA8001, AbFrontier, Seoul, Korea) or anti-rabbit secondary antibody (LF-SA8002, AbFrontier) was used.
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7

Mitochondrial Function Assay Protocol

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The reagents used in this study were adenosine diphosphate (ADP) sodium salt, antimycin A, bovine serum albumin (BSA), fatty acid (FA)-free BSA, carbonyl cyanide m-chlorophenylhydrazone (CCCP), D-mannitol, eosin, ethylenediaminetetraacetic acid disodium salt dihydrate (EDTA), ethylene glycol-bis(2-aminoethyl ether)-N,N,N′,N′-tetraacetic acid (EGTA), 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), hematoxylin, horseradish peroxidase (HRP), K-lactobionate, magnesium chloride (MgCl2), nicotinamide adenine dinucleotide 2′-phosphate-reduced (NADPH), nicotinamide adenine dinucleotide phosphate (NADP+), oligomycin, phenylmethylsulfonyl fluoride (PMSF), rotenone, safranin O, Sirius red, sodium chloride (NaCl), sodium dodecyl sulfate (SDS), sodium glutamate, sodium malate, sodium phosphate monobasic (NaH2PO4), sodium pyruvate, sodium succinate dibasic, sucrose, taurine, and tris hydrochloride (Tris-HCl), which were purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium pentobarbital (PISABENTAL®, Mexico City, Mexico), used as a sedative and anesthetic, was purchased from Proveedora Veterinaria Kan S. A. de C. V. (Mexico City, Mexico).
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