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3 protocols using anti syntaxin6

1

Imaging Flow Cytometry for Immune Cell Analysis

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For imaging flow cytometry experiments: anti-CD8 APC-Cy7 (BD Biosciences, San Jose, CA or Tonbo Biosciences, San Diego, CA) and anti-CD56 PE-CF594 (BD Biosciences) were used for surface staining; all intracellular stains included anti-perforin D48 PE or BV421 (Biolegend, San Diego, CA) and anti-perforin δG9 FITC (Biolegend) and one of the following unconjugated antibodies: anti-CD71 (Cell Signaling Technology, Danvers, MA), anti-granzyme B (BD Biosciences), anti-rab3D (Abcam, Cambridge, MA), anti-rab4 (Pierce Antibodies, Waltham, MA), anti-rab5 (Cell Signaling Technology), anti-rab7 (Santa Cruz Biotechnology, Dallas, TX), anti-rab8 (Cell Signaling Technology), anti-rab11a (Cell Signaling Technology), anti-rab27a (Abcam), anti-rab35 (Abcam), anti-rab37 (Abcam), anti-syntaxin6 (Cell Signaling Technology), anti-syntaxin7 (R&D systems, Minneapolis, MN), anti-vti1b (Abcam), anti-VAMP3 (Abcam), anti-VAMP4 (Abcam), or anti-SNAP23 (Abcam). The unconjugated antibodies were detected using goat anti-rabbit AF647, chicken anti-goat AF647, or donkey anti-sheep AF647 secondary antibodies (Invitrogen, Carlsbad, CA). For confocal microscopy, perforin D48 FITC (Abcam), perforin δG9 AF647 (Biolegend), and goat anti-rabbit or donkey anti-sheep AF568 secondary antibodies (Invitrogen) were used, along with the selected rab or SNARE antibody.
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2

Characterization of CD59 and DAF in HAP1 cells

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HAP1 cells were a gift from T.R. Brummelkamp (Netherlands Cancer Institute, Amsterdam, Netherlands; Carette et al., 2011 (link)). They were cultured in Iscove’s modified Dulbecco’s medium containing 10% FCS with antibiotics needed for selection. HEK293 and its derivative HEK293FF6 cells (Hirata et al., 2015 (link)) were cultured in DMEM containing 10% FCS.
Mouse monoclonal anti-CD59 (clone 5H8; Maeda et al., 2007 (link)), anti-DAF (clone IA10; Maeda et al., 2007 (link)), anti-Flag (F3165; M2; Sigma-Aldrich), anti-GFP (HT801-01; TransGen Biotech), anti-HA (H3663; HA-7; Sigma-Aldrich), anti-ERp57 (K0135-3; MBL), rabbit monoclonal antisyntaxin 6 (2869S; Cell Signaling Technology), anticalreticulin (12238S; Cell Signaling Technology), anti-myc (AM933; Beyotime), and polyclonal anticalnexin (C4731; Sigma-Aldrich) were used as primary antibodies. Phycoerythrin (PE)-conjugated goat anti–mouse IgG (12-4010-87; Thermo Fisher Scientific), HRP-conjugated anti–mouse IgG (HS211-01; TransGen Biotech), and anti–rabbit IgG (HS101-01; TransGen Biotech) were used as the secondary antibodies. DNJ (Cayman Chemical), DMJ (Cayman Chemical), KIF (Cayman Chemical), TG (Sigma-Aldrich), dithiothreitol (Sinopharm), and TM (Sigma-Aldrich) were used for drug treatments.
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3

Comprehensive Antibody Validation Protocol

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The following antibodies were used: LACC1 E-12 (anti-FAMIN; sc-376231), E-7 (sc-374553), H-6 (sc-376064) from Santa Cruz; anti-β actin (ab6276) and anti-PMP70 (ab3421) from Abcam; anti-β-tubulin (2128), anti-calnexin (2679), anti-calreticulin (12238), anti-catalase (12980), anti-caveolin-2 (8522), anti-CENP-A (2186), anti-COX-IV (4850), anti-EEA1 (3288), anti-fibrillarin (2639), anti-histoneH3 (4499), anti-LAMP1 (9091), anti-LC3B (2868), anti-NUP98 (2598), anti-PDI (2446), anti-Rab5 (3547) and anti-syntaxin-6 (2869) from Cell Signaling; anti-ABCD3 (HPA032027) from Sigma Aldrich.
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