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5 protocols using mab1501

1

Western Blotting of ESCRT Proteins

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Cells were seeded and transfected as described above in LabTek II chambered coverslips (ThermoScientific). Protein extracts were separated on 4-12% NuPAGE Bis-Tris gradient gels (Life Technologies) and transferred to Nitrocellulose (Protran, GE Healthcare) or PVDF membranes (Amersham Hybond, GE Healthcare). Western blotting was performed by standard methods using antibodies against CHMP4B (1:1000, Abcam, ab105767), actin (1:30000, Merck Millipore, MAB1501), VPS4B (1:500, Abcam, ab137027), GFP (1:5000, Abcam, ab290) and GAPDH (1:2500, Abcam, ab9485).
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2

Immunoblotting for Protein Modifications

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The protein samples were separated by SDS-PAGE, transferred to the nitrocellulose membrane (Whatman), blocked by 5% skim milk for 60 min at room temperature, probed with specific antibodies and then visualized with enhanced chemiluminescence (Tanon). For dot blotting, indicated peptides were dissolved in PBS and dropped on the nitrocellulose membrane. The primary antibodies include anti-α-tubulin (1:10000; Sigma T5168), α-TubK40ac (1:50000; Sigma T7451), α-TubK40me3 (1:1000; homemade), H3K36me3 (1:10000; Abcam ab9050), SETD2 (1:500; Sigma HPA042451), Tuj1 (1:1000; Abcam ab107216), Flag (1:1000; Sigma F7425/F3165), PH3 (1:1000; Millipore 06-570), β-actin (1:1000; Chemicon MAB1501), GAPDH (1:10000; Abcam ab8245) and GST (1:1000; Abcam ab6612). The blot exposure times were always within the linear range of detection and protein bands were quantified using ImageJ software (NIH).
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3

Western Blotting of ESCRT Proteins

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Cells were seeded and transfected as described above in LabTek II chambered coverslips (ThermoScientific). Protein extracts were separated on 4-12% NuPAGE Bis-Tris gradient gels (Life Technologies) and transferred to Nitrocellulose (Protran, GE Healthcare) or PVDF membranes (Amersham Hybond, GE Healthcare). Western blotting was performed by standard methods using antibodies against CHMP4B (1:1000, Abcam, ab105767), actin (1:30000, Merck Millipore, MAB1501), VPS4B (1:500, Abcam, ab137027), GFP (1:5000, Abcam, ab290) and GAPDH (1:2500, Abcam, ab9485).
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4

Protein Blot Analysis of Cellular Markers

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For protein blot analyses, cells were grown to full confluence, washed twice with 1X PBS and immediately scraped off the plate into a microcentrifuge tube with 1X Laemmli sample buffer and heated to 95 °C for 10 min. Protein gels were loaded with equal amounts of proteins and analyzed using antibodies against NAF-1 [11 (link),16 (link)], Anti-TXNIP (Cell signaling technology, D5F3E), Anti-Thioredoxin 2 antibody (Abcam, [EPR15225] ab185544), Anti-actin (Sigma, MAB1501), Anti-IRE1 antibody (Abcam, ab37073), Anti-IRE1 (phospho S724) antibody (Abcam, [EPR5253] ab124945), anti-Mitofusin 2 antibody (Abcam, [6A8] ab56889), Anti-Glutathione Peroxidase 4 (GPX4) antibody (R&D Systems, Biotechne, MAB5457), and Anti-Transferrin Receptor Antibody (Abcam, ab84036). Goat Anti-Rabbit IgG, H&L Chain Specific Peroxidase Conjugate (Sigma, 401315) and Peroxidase-conjugated AffiniPure Goat anti-mouse IgG (H+L) (Jack-son ImmunoResearch Laboratories, AB_10015289) were used as secondary antibodies [7 (link),24 (link)].
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5

Western Blot Analysis of Autophagy and Exosome Markers

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Cells were lysed in radio-immunoprecipitation assay buffer (50 mM Tris pH 4.7, 150 mM NaCl, 1% NP-40, 0.25% Na-deoxycholate, and 1 mM EDTA) with protease and phosphatase inhibitors (Sigma–Aldrich). Cell lysates were quantified using the Pierce BCA protein asay kit (Thermo Fisher Scientific), and proteins were resolved on a 4 to 15% SDS-PAGE gradient gel. Separated proteins were electrophoretically transferred onto polyvinylidene difluoride membranes for subsequent probing with antibodies (CD63 1:1000, ab59479, Abcam; LC3-II 1:1000, CTE4108S, Thermo Fisher Scientific; pan-Actin 1:10000, MAB1501, Abcam). Membranes were washed and incubated with horseradish peroxidase conjugated secondary antibodies (111–035–003, Jackson ImmunoResearch, Pennyslvania, United States). Clarity Western ECL (Bio-Rad, Hercules, California, United States) was used for signal detection using Chemidoc Touch (Bio-Rad). Membranes were stained with Coomassie Blue to observe total protein. Relative protein quantitation was performed by band densitometry using ImageLab 5.2.1 (Bio-Rad); LC3-II was quantified relative to actin, and CD63 relative to total protein after Coomassie staining.
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